PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398834.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 366aa    MW: 37800 Da    PI: 6.0928
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398834.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.11.2e-2395168477
                     STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +++C+adl  +  y++r ++C +h ka + +v+g++ rfCq+C+  h +++f  +krsC++ L++hn+rrr+kq
  XP_011398834.1  95 ADNCTADLGACSFYYQRNHICPAHLKAGAYAVRGVSTRFCQRCGVGHPVEDFSGAKRSCKKALDRHNQRRREKQ 168
                     689********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114119.34190167IPR004333Transcription factor, SBP-box
PfamPF031101.7E-2295166IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.1E-1895154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-2195169IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MVRSWRGPSQ QHLHLDGPMQ WDEMELHLAL DELVKAESCP SPGPAPSAVP AAHPVLGSGG  60
APNALDPGPK LQHAAPGYPP PTPGLSSATW DEQSADNCTA DLGACSFYYQ RNHICPAHLK  120
AGAYAVRGVS TRFCQRCGVG HPVEDFSGAK RSCKKALDRH NQRRREKQGG SEGGQTGEDT  180
GGPSQSRATP HASHANLAAC SAMHPAPPAC QPDAGADWEA SSRFGGGAYA AAQPWNLPPD  240
LLPLLGMSPP EGAVYGGAGP GAAAPAQGTS AGEVAHLQHW LAAGQGWGEF PQQAAQQAWQ  300
QPQDASGESG AFMHSAAPPP APSSLYAALG EPSLSVGSVA MPTLDPGMLS MAPMPPEQLS  360
WLSSQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-17961661484squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398834.10.0Squamosa promoter-binding-like protein 16
TrEMBLA0A087SJN40.0A0A087SJN4_AUXPR; Squamosa promoter-binding-like protein 16
STRINGA0A087SJN40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-17squamosa promoter binding protein-like 4