PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398820.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family GATA
Protein Properties Length: 184aa    MW: 19744.3 Da    PI: 10.2448
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398820.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.61.7e-132360136
            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36
                    C nC +t   Tpl Rrgp+g  tLCnaCGl y+k+g++
  XP_011398820.1 23 CDNCSATAdqTPLQRRGPRGVGTLCNACGLWYAKTGSM 60
                    9******999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.5E-61770IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-92168No hitNo description
CDDcd002022.05E-112269No hitNo description
PROSITE profilePS5011410.1982276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.1E-122261IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-102360IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFDALGERMT ETVNIACIPL WRCDNCSATA DQTPLQRRGP RGVGTLCNAC GLWYAKTGSM  60
RSTRGPRQSK KAESFRASLP SSQTASATLL HSSSSAFHCP TPGSLKRFRS ADSDDPSHRS  120
STHRGQALPR GHARGLARLA LAPAPCYAPP RSDLAHPQRV VHSTAQAVLD LLAEALLDRG  180
RAEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398820.11e-131GATA transcription factor 25
TrEMBLA0A087SJM01e-130A0A087SJM0_AUXPR; GATA transcription factor 25
STRINGA0A087SJM01e-131(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP813455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.27e-09GATA-type zinc finger protein with TIFY domain