PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398770.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family B3
Protein Properties Length: 285aa    MW: 30830.1 Da    PI: 9.3981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398770.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-147104197
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvlt sd++ +gr+v+pk  ae+h  +++ ++++  +++d+ g++ ++++++  ++ s++y+l+ ++++  +   +++gD+++F+  ++ e++
  XP_011398770.1   7 FEKVLTGSDASGNGRIVIPKGQAESHfpEIEAQTGQNFVVMDTYGKKHTFRFRFwiNNASRMYLLE-NTQDVLNRYAMQAGDVLIFS--RSPEGQ 98 
                     99**************************777778889********999999988766677667776.********************..447777 PP

                     .EEEEE CS
              B3  92 lvvkvf 97 
                     ++v  +
  XP_011398770.1  99 YCVCGR 104
                     777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-236105IPR015300DNA-binding pseudobarrel domain
CDDcd100178.49E-226102No hitNo description
SuperFamilySSF1019362.22E-206102IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-97107IPR003340B3 DNA binding domain
PfamPF023624.6E-117102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGTAVLFEKV LTGSDASGNG RIVIPKGQAE SHFPEIEAQT GQNFVVMDTY GKKHTFRFRF  60
WINNASRMYL LENTQDVLNR YAMQAGDVLI FSRSPEGQYC VCGRQGTKED VSRKTATKRL  120
TEGASSKRGG KTSKQPHTDL ARTKRMKSKH EASQVQSVYS SYWSGYSLPP RRDGVFRAVP  180
NASGHETGKV MAQCGCWTAI VDLCGEAFQA FFETAESAAE ALEAALHAPP MPPPPMPPPA  240
PLPAEPRHPL APRASLGQLA EAAAMMPGLS HMSGRNLGPP LGLAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-21610322119B3 domain-containing transcription repressor VAL1
5yzz_C4e-21610322119B3 domain-containing transcription repressor VAL1
5z00_C4e-21610322119B3 domain-containing transcription repressor VAL1
5z00_G4e-21610322119B3 domain-containing transcription repressor VAL1
5z00_K4e-21610322119B3 domain-containing transcription repressor VAL1
5z00_M4e-21610322119B3 domain-containing transcription repressor VAL1
6fas_A3e-2161038105B3 domain-containing transcription repressor VAL1
6fas_B3e-2161038105B3 domain-containing transcription repressor VAL1
6j9a_A4e-21610323120B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398770.10.0B3 domain-containing transcription repressor VAL2
TrEMBLA0A087SJH00.0A0A087SJH0_AUXPR; B3 domain-containing transcription repressor VAL2
STRINGA0A087SJH00.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-24HSI2-like 1