PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398401.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 665aa    MW: 70578.2 Da    PI: 7.5476
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398401.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP828.2e-2671147177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv gC++ l ++ +y  r+kvC++h +a++v+++g  qrfCqq + fh l+ f+ ++rsCr+ La+hn++rr+++
  XP_011398401.1  71 RCQVAGCTSSLGSMARYDVRYKVCSTHRRAEAVTHEGALQRFCQQHGVFHPLEAFEGTQRSCREGLARHNSKRRESR 147
                     6************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-2367133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.02569146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-2370148IPR004333Transcription factor, SBP-box
PfamPF031106.4E-2472145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MALVGADAAL PPLCPAHPAD MNPAEESDGR AGPPTGLVWD PYNAQVVPAA AVLATSSQNV  60
TVPFTTDTNP RCQVAGCTSS LGSMARYDVR YKVCSTHRRA EAVTHEGALQ RFCQQHGVFH  120
PLEAFEGTQR SCREGLARHN SKRRESRKGR AVSSHGGSRR QGRRRRSSAT RPSSEESEEL  180
LSSGTDLPRR ESLRQQQRRA RQETSDSGAY LAGRQSSGLS PVEGGAGEPA SFCSDELLDQ  240
GLPWDELEAP PGLPLPALEL GDASAGPALA GQVAPSLGLS APTALLTRAS FKLYETGPEE  300
LPRDIRSSLE HMIPAHVLEG FVRMGCVHVT LDCLVDCGAT GSPPSGQSLL RGLADLAARP  360
GWAAVPAMHV QVGGLLARAG RGVPDPVVRD LAGEGAPRVE AARRALPLPA SRAVELRLTL  420
HACDLRRDRL LLRSQGVYLE HKLLSVTHDG GGGAWHLVVE ARLPSPIKAA CIRCEVLAGD  480
TLSEPLYLLV SADEGLVKSL HEVSRANPSP TALDGLLFAL GLAGGRLRSR CTVRLSHPLT  540
LERVAACCGP HDAAQLLQLA ADGPEARRRL SKEHPELGAA VDVDCHAPRS SLASRDACLA  600
FVEPALEARF GTWFAERQGG TDTLLLGLSM LSWVLGLLHS RHSTQGTAVL LGLSLVHAAV  660
LVVRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-13721451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158165RRQGRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398401.10.0Squamosa promoter-binding-like protein 8
TrEMBLA0A087SIF10.0A0A087SIF1_AUXPR; Squamosa promoter-binding-like protein 8
STRINGA0A087SIF10.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-16squamosa promoter binding protein-like 8