PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011398188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 24585.5 Da PI: 8.1223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 33 | 66 | 14 | 47 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++v+ +G+ +W++Ia+ +g gR +k+c++rw++ XP_011398188.1 33 ELVETYGPQNWSLIAKSLGSGRNGKSCRLRWFNQ 66 68*****************************996 PP | |||||||
2 | Myb_DNA-binding | 44.9 | 2.6e-14 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + ++T+eE+e ++ + +lG++ W++Ia++++ gRt++ +k++w+ + XP_011398188.1 73 KEAFTQEEEEEILLRHGELGNR-WAAIAKYLP-GRTDNAIKNYWNGH 117 578*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.034 | 22 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-5 | 26 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.56E-23 | 27 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.84E-8 | 30 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-19 | 33 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-9 | 33 | 66 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.723 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-13 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 75 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.34E-8 | 87 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGHWGVKGTA CPAESDGEEM QLDGSRRTCW SPELVETYGP QNWSLIAKSL GSGRNGKSCR 60 LRWFNQLDPN LKKEAFTQEE EEEILLRHGE LGNRWAAIAK YLPGRTDNAI KNYWNGHLKK 120 RLGPSRSADE ADAKRLRSLA SLALDTGHRP GGGAASMHGG GGQAPAALQS SLGDVLRARL 180 SGLAPRGQRL TPGMAGHGVP GGAQEHHEGR SEDNPLSFLA MAASMDAVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-29 | 33 | 122 | 17 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-30 | 33 | 122 | 17 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-30 | 33 | 122 | 17 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011398188.1 | 1e-167 | Transcription factor LAF1 | ||||
TrEMBL | A0A087SHU2 | 1e-165 | A0A087SHU2_AUXPR; Transcription factor LAF1 | ||||
STRING | A0A087SHU2 | 1e-166 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 7e-31 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Entrez Gene | 23615367 |