PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398158.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family AP2
Protein Properties Length: 324aa    MW: 34743 Da    PI: 6.2244
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398158.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.3e-094997154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++++G++ +k+++r++A+ ++      +k+++lg+f  +  Aak ++ ++++ +
  XP_011398158.1 49 PRFRGITKHKRTQRYEAHFWEQ-----KKQVYLGSFQHEVHAAKCHDIMALRCK 97
                    689***************7772.....4**********88****9999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-44997IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-850108IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-850108IPR016177DNA-binding domain
PROSITE profilePS5103212.2250107IPR001471AP2/ERF domain
SMARTSM003801.9E-1050113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLYTKQGGDV HQEPGRGVAQ AGEDSGTQTS AESLPELNPG PGPPTKAAPR FRGITKHKRT  60
QRYEAHFWEQ KKQVYLGSFQ HEVHAAKCHD IMALRCKGLA CDALNFPAET YRCMFHLIEA  120
MTQVGWLAEC YHWQQPLHAV SYLSADLLPR TLVLEASAES APAPSLGAHT HAPATSSLLG  180
KRGLAALGGF DEAWDALEME ELWSDMDDSI LTLDSLEQSF MYRGGPPSLD PLEHIDGTAL  240
FLPAELRPPG AEGAGGRTGG VPRLMRAGPG GLTVSIGSGQ GLKRHDSSLS GLSQSGEHST  300
QSMTPSQVYR GVPLSASHDP AQTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398158.10.0Ethylene-responsive transcription factor WRI1
TrEMBLA0A087SHR20.0A0A087SHR2_AUXPR; Ethylene-responsive transcription factor WRI1
STRINGA0A087SHR20.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-12AP2 family protein