PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011398034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | CPP | ||||||||
Protein Properties | Length: 237aa MW: 24488.9 Da PI: 8.0658 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48 | 2.5e-15 | 106 | 144 | 4 | 42 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++CnCkkskClk+YC+Cfa + +C+ C+C +C N+e++ XP_011398034.1 106 RKCNCKKSKCLKLYCDCFAGNGFCGPACTCVSCANREDN 144 79*********************************9975 PP | |||||||
2 | TCR | 42.4 | 1.4e-13 | 177 | 208 | 1 | 32 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCk 32 ++++gCnCkks C+kkYCeCf+ag C+e+Ck XP_011398034.1 177 QHRRGCNCKKSGCIKKYCECFQAGIACGEHCK 208 5899*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-11 | 103 | 144 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 27.582 | 104 | 217 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.9E-12 | 106 | 142 | IPR005172 | CRC domain |
SMART | SM01114 | 3.6E-9 | 177 | 211 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.1E-10 | 180 | 208 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MALPQSPACV SLARGGRGTA GPALLPITQL RREGSGAEAA AVASLSRHLS APAPPTERQS 60 RLLDSPAAAS GRSQGDRCSP DGTADGASEG MGEALSSLFP FPTGARKCNC KKSKCLKLYC 120 DCFAGNGFCG PACTCVSCAN REDNRGAVQQ QREAILIRNP NAFDQKIAAV DVESGVQHRR 180 GCNCKKSGCI KKYCECFQAG IACGEHCKDG SVAALAADTH LLLDTPLGPE GLLPAPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-18 | 108 | 208 | 14 | 114 | Protein lin-54 homolog |
5fd3_B | 2e-18 | 108 | 208 | 14 | 114 | Protein lin-54 homolog |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011398034.1 | 1e-170 | Lin-54-like protein | ||||
TrEMBL | A0A087SHD9 | 1e-169 | A0A087SHD9_AUXPR; Lin-54-like protein | ||||
STRING | A0A087SHD9 | 1e-170 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP323 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 5e-22 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23617490 |