PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C2H2
Protein Properties Length: 105aa    MW: 11871.8 Da    PI: 8.5983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398015.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000111637323
                    ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                    C +C++ F +  +L +H+++ H
  XP_011398015.1 16 CFYCDREFQDEATLITHQKSkH 37
                    99*****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121717.4E-61436IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576672.81E-61558No hitNo description
Gene3DG3DSA:3.30.40.100.0011649IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0002801637IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MVRKRRRQEE DVKPWCFYCD REFQDEATLI THQKSKHFKC ETCHKRLVTV RALAVHSLQV  60
MKPWQGGGCQ GVTVEGLGVK LEPCCSPCSP VNASTAMADL LRAPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126RKRRR
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398015.15e-74Zinc finger protein 207
SwissprotQ9C5G08e-18SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
SwissprotQ9JMD01e-17ZN207_MOUSE; BUB3-interacting and GLEBS motif-containing protein ZNF207
TrEMBLA0A087SHC31e-72A0A087SHC3_AUXPR; Zinc finger protein 207
STRINGA0A087SHC32e-73(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.13e-20C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]