PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011398015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 105aa MW: 11871.8 Da PI: 8.5983 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 16 | 37 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +C++ F + +L +H+++ H XP_011398015.1 16 CFYCDREFQDEATLITHQKSkH 37 99*****************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12171 | 7.4E-6 | 14 | 36 | IPR022755 | Zinc finger, double-stranded RNA binding |
SuperFamily | SSF57667 | 2.81E-6 | 15 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 0.001 | 16 | 49 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE pattern | PS00028 | 0 | 16 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 105 aa Download sequence Send to blast |
MVRKRRRQEE DVKPWCFYCD REFQDEATLI THQKSKHFKC ETCHKRLVTV RALAVHSLQV 60 MKPWQGGGCQ GVTVEGLGVK LEPCCSPCSP VNASTAMADL LRAPL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 6 | RKRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011398015.1 | 5e-74 | Zinc finger protein 207 | ||||
Swissprot | Q9C5G0 | 8e-18 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
Swissprot | Q9JMD0 | 1e-17 | ZN207_MOUSE; BUB3-interacting and GLEBS motif-containing protein ZNF207 | ||||
TrEMBL | A0A087SHC3 | 1e-72 | A0A087SHC3_AUXPR; Zinc finger protein 207 | ||||
STRING | A0A087SHC3 | 2e-73 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4135 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30970.1 | 3e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 23613397 |
Publications ? help Back to Top | |||
---|---|---|---|
|