PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397921.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 449aa    MW: 49724.9 Da    PI: 7.3409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397921.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-062132291026
                     GGTS--TTTTT-SS-SS CS
         zf-CCCH  10 artGtCkyGdrCkFaHg 26 
                      r+  C++GdrC+++H 
  XP_011397921.1 213 KRNNSCPRGDRCPYSHN 229
                     57779***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.50.80.105.6E-521143IPR023509D-Tyr tRNAtyr deacylase-like domain
SuperFamilySSF695002.88E-481143IPR023509D-Tyr tRNAtyr deacylase-like domain
TIGRFAMsTIGR002562.9E-371143IPR003732D-aminoacyl-tRNA deacylase DTD
PfamPF025801.2E-442143IPR003732D-aminoacyl-tRNA deacylase DTD
PROSITE profilePS5010312.615203231IPR000571Zinc finger, CCCH-type
SMARTSM003560.089203230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5203234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5209232IPR000571Zinc finger, CCCH-type
SMARTSM003563.9239262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019478Biological ProcessD-amino acid catabolic process
GO:0005737Cellular Componentcytoplasm
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRTVIQRVKS ASVSVDGEVV SSIGPGLLCY IGLGKDDSEE DAAYIIRKIL GIRLWPSQDG  60
KKPWHRNVQD VDGSVLCVSQ FTLFGRLSGN KPDYSRAQSP NTARDQYHAV LEALGKAYRP  120
ERVRDGVFGA MMDVASVNDG PETDTPLEFD DSRILDSPVL DETFYESDEF RMWEMKAAAH  180
DWTTCPFAHA GEKAVRRAPR THDYTGIACP DMKRNNSCPR GDRCPYSHNV FEYWLHPTRY  240
RTQLCNDGPA CRRRPCFFAH SLEQLRQSDV RPFVSPQALA RVGTEGTLPF MTRWSAPGRL  300
ASDPGEDTEA TLVALLASLK VERTRHLGNT ACTNHEVVIS TLHQVLQQAK QAQRSLGHSA  360
SEGESSCGSP PWTRRLEGRD QVPAAYQDHL DGRGRKGSGM NPLGLNLRNF SVAETDSGVV  420
GFAQLKPLTA SSVELASLVI LEKHRFVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3lmv_E6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
3lmv_F6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbi_A6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbi_B6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_A6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_B6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_C6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_D6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_E6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_F6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_G6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
4nbj_H6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_A6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_B6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_C6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_D6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_E6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_F6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_G6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
5j61_H6e-3711431152D-tyrosyl-tRNA(Tyr) deacylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397921.10.0D-tyrosyl-tRNA(Tyr) deacylase
TrEMBLA0A087SH290.0A0A087SH29_AUXPR; D-aminoacyl-tRNA deacylase
STRINGA0A087SH290.0(Auxenochlorella protothecoides)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-41C3H family protein