PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011397884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | SBP | ||||||||
Protein Properties | Length: 407aa MW: 42828.8 Da PI: 4.4935 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 72.2 | 9.6e-23 | 2 | 55 | 23 | 76 |
--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 23 vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C h+ +++++ g+ rfCqqC++f l +fD+ekr+Cr+rL+ hn+rrrkk XP_011397884.1 2 ICPYHAAVASITIGGVASRFCQQCGKFQPLADFDDEKRTCRHRLEMHNARRRKK 55 8***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 19.358 | 1 | 55 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.97E-19 | 2 | 59 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 3.5E-14 | 2 | 42 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-20 | 2 | 55 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MICPYHAAVA SITIGGVASR FCQQCGKFQP LADFDDEKRT CRHRLEMHNA RRRKKPDSAY 60 LTLDTAGTDG MTDSGMLSHN SSSKGDSAGT TPLAKLYMDS WDSAQPMDDG LLSFLDPIPA 120 LSCPLMSDPP SSTLGLSTED LDGILDDLFG GLAAETGLGV DDAWAAEAAV PLHALAPFPR 180 MARISLKLYG VEPGSLPASL QESLVDLLRC PPGDLEGAIR PGCTHLELLG WAEKHGVTWA 240 GSAPTSRPEA AHSAPPSEVA AGAATGLRRR AAAQAAPADP RADAPADDSN TPVDTPSGSP 300 ARPALEESLV GPLPDGPAEA PLDSPAYAKP AKVVGDAWVS DEDAREGEAV VAGVKAGDDL 360 SRRGSGLDDG PGRDGGDTRW EVERLLQRYE RRAATPSCFL WDWMFRA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011397884.1 | 0.0 | Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A087SGZ2 | 0.0 | A0A087SGZ2_AUXPR; Squamosa promoter-binding-like protein 9 | ||||
STRING | A0A087SGZ2 | 0.0 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 6e-18 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Entrez Gene | 23613266 |