PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397884.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 407aa    MW: 42828.8 Da    PI: 4.4935
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397884.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP72.29.6e-232552376
                    --HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP 23 vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                    +C  h+  +++++ g+  rfCqqC++f  l +fD+ekr+Cr+rL+ hn+rrrkk
  XP_011397884.1  2 ICPYHAAVASITIGGVASRFCQQCGKFQPLADFDDEKRTCRHRLEMHNARRRKK 55
                    8***************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114119.358155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-19259IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.5E-14242IPR004333Transcription factor, SBP-box
PfamPF031102.6E-20255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MICPYHAAVA SITIGGVASR FCQQCGKFQP LADFDDEKRT CRHRLEMHNA RRRKKPDSAY  60
LTLDTAGTDG MTDSGMLSHN SSSKGDSAGT TPLAKLYMDS WDSAQPMDDG LLSFLDPIPA  120
LSCPLMSDPP SSTLGLSTED LDGILDDLFG GLAAETGLGV DDAWAAEAAV PLHALAPFPR  180
MARISLKLYG VEPGSLPASL QESLVDLLRC PPGDLEGAIR PGCTHLELLG WAEKHGVTWA  240
GSAPTSRPEA AHSAPPSEVA AGAATGLRRR AAAQAAPADP RADAPADDSN TPVDTPSGSP  300
ARPALEESLV GPLPDGPAEA PLDSPAYAKP AKVVGDAWVS DEDAREGEAV VAGVKAGDDL  360
SRRGSGLDDG PGRDGGDTRW EVERLLQRYE RRAATPSCFL WDWMFRA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397884.10.0Squamosa promoter-binding-like protein 9
TrEMBLA0A087SGZ20.0A0A087SGZ2_AUXPR; Squamosa promoter-binding-like protein 9
STRINGA0A087SGZ20.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.26e-18squamosa promoter binding protein-like 7