PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397839.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 323aa    MW: 33902.6 Da    PI: 9.3406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397839.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-10855346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqk 46
                      WT+ E e l+++v+ +G g W+ I +  +     gRt+ q+k++w++
   XP_011397839.1  8 VWTAKEVEALKRGVEAHGVGFWEQIRSDPQfevlRGRTGVQLKDKWRN 55
                     6**********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.532161IPR017930Myb domain
SMARTSM007174.6E-8559IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-14559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-13759IPR009057Homeodomain-like
PfamPF002493.8E-7856IPR001005SANT/Myb domain
CDDcd116606.94E-19958No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000785Cellular Componentchromatin
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSQRAYNVWT AKEVEALKRG VEAHGVGFWE QIRSDPQFEV LRGRTGVQLK DKWRNIVKFQ  60
RAAALRNEAA SPASARWSRR GPRAVRTPSP PPSTAASPLP IFKEEPGVAE RMYVAALAAA  120
CTTSALASRD PCPANIAACA AASADLHLAR VRLLGAGAPC PSHAAGQRRS GSAPSVQGFD  180
RGLAGPAGAH GPASLSPGEA EGVNPSGQLD QVLSAARQLS MDRMGSMNDS LVLDIAAFME  240
LASVLPPELA LPPAALLEMY HALGGEQRPR GPRRRLGGVE LFDPGAPTAP DWASLLPGVL  300
EGRQQPLAQE TVAAVVAAMS AWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397839.10.0hypothetical protein F751_1830
TrEMBLA0A087SGU70.0A0A087SGU7_AUXPR; Uncharacterized protein
STRINGA0A087SGU70.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP413177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-10telomere repeat binding factor 3