PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011397839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 33902.6 Da PI: 9.3406 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.2e-10 | 8 | 55 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqk 46 WT+ E e l+++v+ +G g W+ I + + gRt+ q+k++w++ XP_011397839.1 8 VWTAKEVEALKRGVEAHGVGFWEQIRSDPQfevlRGRTGVQLKDKWRN 55 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.532 | 1 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-8 | 5 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.84E-14 | 5 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-13 | 7 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-7 | 8 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.94E-19 | 9 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000785 | Cellular Component | chromatin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MSQRAYNVWT AKEVEALKRG VEAHGVGFWE QIRSDPQFEV LRGRTGVQLK DKWRNIVKFQ 60 RAAALRNEAA SPASARWSRR GPRAVRTPSP PPSTAASPLP IFKEEPGVAE RMYVAALAAA 120 CTTSALASRD PCPANIAACA AASADLHLAR VRLLGAGAPC PSHAAGQRRS GSAPSVQGFD 180 RGLAGPAGAH GPASLSPGEA EGVNPSGQLD QVLSAARQLS MDRMGSMNDS LVLDIAAFME 240 LASVLPPELA LPPAALLEMY HALGGEQRPR GPRRRLGGVE LFDPGAPTAP DWASLLPGVL 300 EGRQQPLAQE TVAAVVAAMS AWN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011397839.1 | 0.0 | hypothetical protein F751_1830 | ||||
TrEMBL | A0A087SGU7 | 0.0 | A0A087SGU7_AUXPR; Uncharacterized protein | ||||
STRING | A0A087SGU7 | 0.0 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4131 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49850.1 | 1e-10 | telomere repeat binding factor 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 23613221 |