PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397736.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family ARR-B
Protein Properties Length: 618aa    MW: 63258.3 Da    PI: 5.4499
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397736.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.14.6e-194274681355
         G2-like  13 rFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      F  av+qL G++kA+Pk+ilelm+ kgLt+e+v+SHLQkYR+
  XP_011397736.1 427 VFAMAVAQL-GIDKAVPKRILELMGTKGLTRENVASHLQKYRM 468
                     5899*****.********************************8 PP
2Response_reg74.15.3e-252343451110
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                     vl+vdD+p  ++++  +l++ +y ev +a ++  al++l++++    +Dl+l+D+ mp+mdG+ell+     +  +p+i+++a+g+ e +l+ + 
  XP_011397736.1 234 VLLVDDDPMCLNVVSAMLRRCNY-EVITACSAGMALQMLQDSNtsahIDLVLCDVYMPDMDGFELLEIV-GLSLGIPVIMMSATGDTEVVLKGVT 326
                     89*********************.999999999******99999999*******************866.55568******************** PP

                     TTESEEEESS--HHHHHHH CS
    Response_reg  92 aGakdflsKpfdpeelvka 110
                      Ga dfl +p+  eel++a
  XP_011397736.1 327 HGAVDFLINPVRLEELRNA 345
                     ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.9E-32231348No hitNo description
SuperFamilySSF521721.07E-32231349IPR011006CheY-like superfamily
SMARTSM004487.7E-31232346IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.836233350IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-20234345IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.78E-28235345No hitNo description
SuperFamilySSF466893.4E-11425472IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-19426473IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17426468IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MTDGELASAL EGVLEGKAGD SLKTPAPAAA TAAPRVGGAQ GEAAARQSLL DGQKTLQREF  60
EALAGRVRVG LDEGHAPAPS APEQLNGPSQ GLGPPADLPL PAPDHPGVPQ GPGPGESLFS  120
GSPSVASAAT EAVRGFARAT TTILRGASEW ATVGLHGAIT RLENIPDRQK VAGGAVLGLG  180
AAALLALGLW RGSSDGASSG REELRMSVLG THTGRAQDVP QAATQLFTPA GLHVLLVDDD  240
PMCLNVVSAM LRRCNYEVIT ACSAGMALQM LQDSNTSAHI DLVLCDVYMP DMDGFELLEI  300
VGLSLGIPVI MMSATGDTEV VLKGVTHGAV DFLINPVRLE ELRNAAPVAA SPRVGAPAAV  360
HNAEASAGSQ SGGGEESGSG GPQAPVGTWA SHELRGDERG DERGDSLDHG SGPASDSRHR  420
QPRKPRVFAM AVAQLGIDKA VPKRILELMG TKGLTRENVA SHLQKYRMYL KKVQQSDSSR  480
GATGQDAASI GSAFMLSEGE SMASEPTAAA SLATDLASPL RGNPASGVGL GPGAGSAGAR  540
QADPRSSDAS DPVMPGGLFP FPLQPYQVHQ GWAPESMPGA HMQQYGGPSA AASLQMGGGR  600
MPPWMGMPQA AMHMAMVR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397736.10.0Two-component response regulator ARR1
TrEMBLA0A087SGJ40.0A0A087SGJ4_AUXPR; Two-component response regulator ARR1
STRINGA0A087SGJ40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-58response regulator 1