PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011397494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | MYB_related | ||||||||
Protein Properties | Length: 229aa MW: 23572.7 Da PI: 10.0006 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.1 | 7.1e-12 | 41 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E+ ++ + +qlG+g+Wk I+ Rt+ q+ s+ qk+ XP_011397494.1 41 PWSETEHAAFLAGLRQLGKGQWKHISLLYVPSRTPTQVASHAQKH 85 8*************************99988************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.801 | 34 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-14 | 37 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-8 | 38 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 38 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-13 | 38 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-9 | 41 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-8 | 41 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MCASPLAGFE LPPRLTLNEE LARSEKQRYG GGRKECRKGE PWSETEHAAF LAGLRQLGKG 60 QWKHISLLYV PSRTPTQVAS HAQKHFLRAA GATKRRSRFT AVEAAVTHQQ ALGARSPPGD 120 ATAGHATALS PPTGAEAARC SPAAQPSGDA SVPLGALHPT ALLPQPGAVA EGKPFFPLGP 180 HGIPILPTTP GRIKGSASGC ATDTGSLAAL AGVAAALSQD SDSFSGVWP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011397494.1 | 1e-162 | Transcription factor MYB1R1 | ||||
TrEMBL | A0A087SFV2 | 1e-161 | A0A087SFV2_AUXPR; Transcription factor MYB1R1 | ||||
STRING | A0A087SFV2 | 1e-162 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-21 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23613715 |