PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011397394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | NF-YC | ||||||||
Protein Properties | Length: 210aa MW: 23239.4 Da PI: 6.7926 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 120.7 | 6.4e-38 | 50 | 138 | 13 | 95 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllsk......acelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 + fkn++lPlarikki+k+dedv+misaeaPvl++k ace+f+lelt r+w aeenkrrtl+++d+a a+++ d+fdfl+di XP_011397394.1 50 PAHFKNQTLPLARIKKIMKSDEDVRMISAEAPVLFAKasgctaACEFFVLELTQRAWQAAEENKRRTLQRNDVAMAIQHIDVFDFLLDI 138 468*********************************95444445********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.11E-26 | 33 | 135 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.7E-33 | 52 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-19 | 57 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAAPDQQAPN SFGSFPNQPG PRTFTYYPNE SLRRLWQEAK DEIAMTEPDP AHFKNQTLPL 60 ARIKKIMKSD EDVRMISAEA PVLFAKASGC TAACEFFVLE LTQRAWQAAE ENKRRTLQRN 120 DVAMAIQHID VFDFLLDIAG PGGYGTSPRF LQTQGMQYPQ YHPSMGPPPQ AGMYGSGGGQ 180 QQFVAPYHQP MAPVPPPSLT LSHPLLHASP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-37 | 53 | 139 | 13 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011397394.1 | 1e-156 | Nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 3e-38 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A087SFK2 | 1e-154 | A0A087SFK2_AUXPR; Nuclear transcription factor Y subunit C-2 | ||||
STRING | A0A087SFK2 | 1e-155 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2195 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-40 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Entrez Gene | 23614615 |
Publications ? help Back to Top | |||
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