PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011397265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | SBP | ||||||||
Protein Properties | Length: 484aa MW: 50615.6 Da PI: 8.3075 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 104.7 | 6.9e-33 | 104 | 179 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC + l +y++r++vC+ h k p+ +v+gl qrfCqqC+rfh l+ fD +kr Cr rL++hn+rrrk XP_011397265.1 104 TCQVLGCGQSLVGHADYYQRYRVCKPHLKGPALIVEGLPQRFCQQCGRFHPLDAFDGDKRNCRARLEQHNSRRRKV 179 6*************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 25.658 | 102 | 179 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 8.3E-28 | 102 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.65E-30 | 103 | 181 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.6E-31 | 105 | 178 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MDAKVVAHDS GSTSTASGGA GPKDPLRPAV QASWMLSGDT ATQYGKSADA PLPGLGSQPE 60 ASVGFQARVH QGMGELPGPS STANIPVLPD IARLKDSRRD IPLTCQVLGC GQSLVGHADY 120 YQRYRVCKPH LKGPALIVEG LPQRFCQQCG RFHPLDAFDG DKRNCRARLE QHNSRRRKVF 180 TTTQASRRPA GKREEPLHSA GPTSGDWAGD AQLASSAPSQ DVMQPHLAGL PPSLIMDLQA 240 DNLAQESMAQ RQASSESALG LLERIFSEPA RGPYGWRHQP QQSEDPHQGQ RPVALGPAGS 300 RDLGRGQTSN AMSNEMSQLL GLWSNAGLTS EDLGRMLSST ASRQLSASVP STLAGALLSE 360 PPRAPLPSVR LWPPEGGGSA GCSSHSPFQR TGPDPAGGSG YDAAGRHLAL LRQVLAAAGA 420 GGGGPQASQQ LLLAALLGMQ SRERGRAPLQ DGGHPDLLQM LQTTLVGGRQ GPAAQDPGEG 480 GPQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-18 | 105 | 178 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011397265.1 | 0.0 | Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A087SF73 | 0.0 | A0A087SF73_AUXPR; Squamosa promoter-binding-like protein 6 | ||||
STRING | A0A087SF73 | 0.0 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-25 | SBP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23614486 |