PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397265.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 484aa    MW: 50615.6 Da    PI: 8.3075
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397265.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP104.76.9e-33104179176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +Cqv gC + l    +y++r++vC+ h k p+ +v+gl qrfCqqC+rfh l+ fD +kr Cr rL++hn+rrrk 
  XP_011397265.1 104 TCQVLGCGQSLVGHADYYQRYRVCKPHLKGPALIVEGLPQRFCQQCGRFHPLDAFDGDKRNCRARLEQHNSRRRKV 179
                     6*************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114125.658102179IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.3E-28102166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.65E-30103181IPR004333Transcription factor, SBP-box
PfamPF031107.6E-31105178IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDAKVVAHDS GSTSTASGGA GPKDPLRPAV QASWMLSGDT ATQYGKSADA PLPGLGSQPE  60
ASVGFQARVH QGMGELPGPS STANIPVLPD IARLKDSRRD IPLTCQVLGC GQSLVGHADY  120
YQRYRVCKPH LKGPALIVEG LPQRFCQQCG RFHPLDAFDG DKRNCRARLE QHNSRRRKVF  180
TTTQASRRPA GKREEPLHSA GPTSGDWAGD AQLASSAPSQ DVMQPHLAGL PPSLIMDLQA  240
DNLAQESMAQ RQASSESALG LLERIFSEPA RGPYGWRHQP QQSEDPHQGQ RPVALGPAGS  300
RDLGRGQTSN AMSNEMSQLL GLWSNAGLTS EDLGRMLSST ASRQLSASVP STLAGALLSE  360
PPRAPLPSVR LWPPEGGGSA GCSSHSPFQR TGPDPAGGSG YDAAGRHLAL LRQVLAAAGA  420
GGGGPQASQQ LLLAALLGMQ SRERGRAPLQ DGGHPDLLQM LQTTLVGGRQ GPAAQDPGEG  480
GPQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-181051781184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397265.10.0Squamosa promoter-binding-like protein 6
TrEMBLA0A087SF730.0A0A087SF73_AUXPR; Squamosa promoter-binding-like protein 6
STRINGA0A087SF730.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-25SBP family protein