PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011397002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | Whirly | ||||||||
Protein Properties | Length: 248aa MW: 26840.2 Da PI: 9.3383 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 113.6 | 1.5e-35 | 74 | 209 | 2 | 138 |
Whirly 2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrkal 94 vyk+kaa++vk ++pt++ +g+ ++++r+G+ll+e+ana +er ydWekk++falsa e a +++ + + + ++ffhdp + ++neG++ k+l XP_011397002.1 74 VYKSKAAFSVKVIKPTWGRTGTGSgITVTRDGTLLFEFANARGERDYDWEKKENFALSAVECAGILEsVEAGKEASFFHDPNKMSANEGQIVKTL 168 9****************99977653789*********************************998777799************************* PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 ++ P + s +f++lsv+n+ + +f +P+s ae v+rs++ XP_011397002.1 169 RLSPGQNNS-YFMSLSVKNQ--GQQARFDLPLSSAELRVVRSII 209 ****98876.9********9..67889*************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.2E-49 | 65 | 223 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.51E-29 | 67 | 223 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.0E-39 | 74 | 208 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MISSALAAAR SSAGTRFRHA FQTTCQASGF RQAGAAAYQS AAYSPPSGSR PFVSRPTNDA 60 PDPRKVIIFT NYTVYKSKAA FSVKVIKPTW GRTGTGSGIT VTRDGTLLFE FANARGERDY 120 DWEKKENFAL SAVECAGILE SVEAGKEASF FHDPNKMSAN EGQIVKTLRL SPGQNNSYFM 180 SLSVKNQGQQ ARFDLPLSSA ELRVVRSIID FMIPYMLGFN ELVLGPPDIQ DGSSGGQFNT 240 PGGPEPPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 2e-32 | 68 | 226 | 11 | 170 | StWhy2 |
3n1i_A | 2e-32 | 68 | 226 | 11 | 170 | protein StWhy2 |
3n1j_A | 2e-32 | 68 | 226 | 11 | 170 | Protein StWhy2 |
3n1k_A | 2e-32 | 68 | 226 | 11 | 170 | protein StWhy2 |
3n1l_A | 2e-32 | 68 | 226 | 11 | 170 | protein StWhy2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011397002.1 | 0.0 | hypothetical protein F751_1381 | ||||
TrEMBL | A0A087SEG2 | 0.0 | A0A087SEG2_AUXPR; Uncharacterized protein | ||||
STRING | A0A087SEG2 | 0.0 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2026 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 7e-33 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 23612772 |