PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396693.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family GATA
Protein Properties Length: 97aa    MW: 10501.9 Da    PI: 10.4727
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396693.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.3e-181851134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    Cs+Cg+t++p+WRrgp  ++ LCnaCG +yr+++
  XP_011396693.1 18 CSHCGVTESPQWRRGPAHKPLLCNACGTRYRRTN 51
                    ****************98888**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-111264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5191265IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-151564No hitNo description
CDDcd002022.05E-151757No hitNo description
Gene3DG3DSA:3.30.50.101.1E-131756IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-151851IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSLQEILASR AAFGGPSCSH CGVTESPQWR RGPAHKPLLC NACGTRYRRT NQFLPLHATP  60
GSRKRATSAP QTCAQENALE DKAHTGFKQP RLIASTA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396693.11e-66GATA transcription factor 26
TrEMBLA0A087SDL13e-65A0A087SDL1_AUXPR; GATA transcription factor 26
STRINGA0A087SDL15e-66(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-13GATA transcription factor 26