PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396667.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 549aa    MW: 58544.6 Da    PI: 6.0184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396667.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-16374419148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+ Ed+ l +a++++G+  W ++ar ++ gR++ qc++rw ++l
   XP_011396667.1 374 RGKWTASEDDALQRAIALHGKT-WVAVARLVP-GRSDVQCRERWMNVL 419
                      89******************88.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-8221277IPR009057Homeodomain-like
PROSITE profilePS5129410.659226282IPR017930Myb domain
SuperFamilySSF466891.14E-7229279IPR009057Homeodomain-like
SMARTSM007172.8E-5230280IPR001005SANT/Myb domain
PfamPF002491.8E-5234274IPR001005SANT/Myb domain
CDDcd001679.73E-5236277No hitNo description
PROSITE profilePS500905.517309360IPR017877Myb-like domain
SuperFamilySSF466891.14E-7310344IPR009057Homeodomain-like
SMARTSM007171.3313362IPR001005SANT/Myb domain
PROSITE profilePS5129422.996369423IPR017930Myb domain
SMARTSM007176.1E-17373421IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-18373422IPR009057Homeodomain-like
PfamPF002492.0E-15374419IPR001005SANT/Myb domain
SuperFamilySSF466891.41E-19374462IPR009057Homeodomain-like
CDDcd001677.83E-13376419No hitNo description
Gene3DG3DSA:1.10.10.601.4E-4435464IPR009057Homeodomain-like
PROSITE profilePS500904.612435462IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSPGASSASE DSEDEEELNE LQALQDELAA LRSVLGEAYR EARLRRLLES IESAASRNAD  60
AEACVAALRA RKRQAGALRS ASSGLKEPAF PVPSRAWAVG DEPPPLHPEA AVLAPVYRYL  120
PHTFPSTALS REDAARLRGA VIQLVQEKRT NAVLEAVEAE LAAGQPLTPA DIQARCAGVE  180
ALTLDDPGVE AATLAFDRGD WQVVQQRAGV ASGASGCRLG WVNGLRPGLR HDAYEPEEDA  240
ALADAVARLG VHQWPAVAAE LGGKRTAIAS LRRWLELERR ASSAPRSQEG AAGPVPSGME  300
AGTAGPSAGP ARQGGELSPD QLSLLARLMQ RHGPRWKMLA EKMGPGWDRQ SLMHAWRRHT  360
QRGSLGGGTA TPRRGKWTAS EDDALQRAIA LHGKTWVAVA RLVPGRSDVQ CRERWMNVLN  420
PDVTSTAPFT AEPNGRVKWA AIAALLPGRT DKAVAMRHAR LLKREATVEA GSGICPGSEH  480
TDAPPSSTQS GDEDDASRAA AEPEADWRQH SVVYEQDGSC VKETLLTEVV AWEDGSVTGP  540
GAVWKAVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A2e-1337345710102MYB21
3osf_D2e-1337345710102MYB21
3osg_A2e-1337345710102MYB21
3osg_D2e-1337345710102MYB21
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396667.10.0Myb-like protein L
TrEMBLA0A087SDI50.0A0A087SDI5_AUXPR; Myb-like protein L
STRINGA0A087SDI50.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.19e-18myb domain protein 69