PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396430.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 1153aa    MW: 120475 Da    PI: 7.0841
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396430.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-0710761101227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                      ++++C f+ +tG+Ck+G  C+F H+p
  XP_011396430.1 1076 GHAICEFYTKTGHCKFGRWCRFDHPP 1101
                      789*********************96 PP
2zf-CCCH36.21e-1111161141126
                      --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                      ++t+ C+f+ r+G Ck+G++CkF+H+
  XP_011396430.1 1116 PGTPVCSFYERYGACKFGASCKFHHP 1141
                      68***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005640.0294476IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
Gene3DG3DSA:2.140.10.105.0E-74883IPR027295Quinoprotein alcohol dehydrogenase-like domain
SuperFamilySSF509981.38E-114977IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SuperFamilySSF509981.38E-11124181IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.140.10.105.0E-7137179IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM005640.19142174IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM0056494254284IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SuperFamilySSF509981.38E-11309336IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SMARTSM002204.3E-35611876IPR000719Protein kinase domain
PROSITE profilePS5001135.184611876IPR000719Protein kinase domain
SuperFamilySSF561122.46E-50615876IPR011009Protein kinase-like domain
PfamPF000694.9E-34616874IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.207.4E-12617727No hitNo description
Gene3DG3DSA:1.10.510.101.4E-35728877No hitNo description
PROSITE patternPS001080736748IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139235.3618791011IPR010513KEN domain
CDDcd104222.40E-538801009No hitNo description
PfamPF064797.8E-388821008IPR010513KEN domain
SMARTSM005807.6E-14942996IPR018997PUB domain
PROSITE profilePS5010312.5410741102IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-410741101IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-510761101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-510771101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.65711151143IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-711151142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-511161141IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-911161141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-411191140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0008380Biological ProcessRNA splicing
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0046777Biological Processprotein autophosphorylation
GO:0090501Biological ProcessRNA phosphodiester bond hydrolysis
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1153 aa     Download sequence    Send to blast
MASGRGGRWL TILLALILIV NPSLASDSVS VLDPAAAAEA PAPGASPAPN HLLVSLANGR  60
LVALDPGTGE EVWSFDSGAP LVSSAASWDA APAPGSRPPG PQDIVFPGTD GSLYVAREGP  120
GTSPVRVERL PVKVADLVGL APSPAADGSL VLGSQHTTVY VLDGDTGQLL RTVYDFEGDP  180
GRLLPRERGG VQGLLRLPAR QDSDDQGGNG AAGKRATRDG LDADADTPPR NPPPRRTSGP  240
GPIKGRVTIT DNTAPVPRRT VLVGRKDYVL RSVDPLVGEQ WNVSWSRLEA MGSLGGGCVT  300
PGPGTGPADP GLHLAVGTDH SLRRYSAADG AQHWAAHFDS PPVSVVRGAG GRELLRAPGD  360
DPGADSRPAP SPSLLSRLGA GLWSGSEERR LEGSLPGRGA PAESVVVGIM EGAGIYAMPR  420
GRLAVIGDGG DPGSKTAQVQ AGAGSPAPRP RRKPGSAQKK RSQQSRLIAA ASVDAGTTQE  480
GPANGVRSEA APASPERGKS TFVVANVAPP ADGSEAKDGV PPPGATLADS NGLAGSGEGC  540
TPAASPGSLQ AAAPCEGIPA EPERSPAPSD SDPASSDPPP MPAGPTPLPA RTLPGPSPSA  600
SRGALAVGRM LVGPGILGLG SGGTVVFEGS LDGRPVAVKR LLRQFYDLAA SEIRTLILSD  660
EHVNVVRYIA MEEDAQFCYL ALERCAGSLN DVLAGGGRRL AAADFWDAAT GTPSALALRV  720
AADACRGVAA LHARGIVHRD LKPHNILLTA AGCAKLSDMG LSRRLVPDQI SFETLGSGGS  780
SGWQAPEQLA ARDGQSARQT LAVDVFSLGL VVFYCLTQGE HPFGSGVERD ANIFHGKLRM  840
GRLESQAIAA DLVRGMLAQD PRRRPSAAAV LTHPLWWPSA QRLAFLIDVS DRVEGEDRVE  900
DGSMYEALEG LGLLAIPSGS WAPALDSRLV NNLGKYRRYN YASLRDLLRV IRNKHSHFRE  960
LPLDLQERLG PLPHGFLAYF EERFPSLLLA CYYFAVRHCS DEPVFAKYLT PDSAELVEKL  1020
GPPADLRRTL PVLLSPDRPP FDPGLRAEAG AGWARGGQGG AAPPADVEGE LPRRPGHAIC  1080
EFYTKTGHCK FGRWCRFDHP PEYAVQRNEQ GLPLRPGTPV CSFYERYGAC KFGASCKFHH  1140
PSLSGQPTVR GSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G7e-96606100930446Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448452RPRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396430.10.0Serine/threonine-protein kinase/endoribonuclease IRE1
TrEMBLA0A087SCV20.0A0A087SCV2_AUXPR; Serine/threonine-protein kinase/endoribonuclease IRE1
STRINGA0A087SCV20.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.19e-22zinc finger nuclease 3