PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011396127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 375aa MW: 40364.7 Da PI: 6.5161 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.2 | 4.9e-14 | 37 | 87 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV w+k++ +W+A+I++ k+ lg++ ++e Aa a++ ++ +l+g+ XP_011396127.1 37 SKYRGVVWHKSNSKWEARIYEG-----GKQKFLGYYTSEEAAAHAYDTYAVRLHGN 87 89****************9993.....4**************************95 PP | |||||||
2 | AP2 | 39.8 | 1.2e-12 | 117 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+w+++ +W+A+++ + ++lg+f +e+Aa+a+++a ++++g XP_011396127.1 117 SRFRGVSWNSNCAKWRAQVWKG-----SEVHHLGYFEGEEDAARAYDEAVLRIRG 166 789***************7663.....6*************************98 PP | |||||||
3 | AP2 | 25.6 | 3.1e-08 | 198 | 247 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sg++GV+w + W+Ae++ ++ lg+f + Aa++++ a ++l+g XP_011396127.1 198 SGFRGVSWSDAHQAWLAELWNG-----SRFQLLGSFRDEASAARRYDVACLELNG 247 79****************8883.....455568*****99*********999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-7 | 37 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-16 | 37 | 95 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.132 | 38 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-13 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-13 | 38 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-14 | 117 | 176 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-7 | 117 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-13 | 118 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-10 | 118 | 180 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.434 | 118 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-9 | 198 | 256 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-4 | 198 | 247 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-4 | 199 | 261 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.314 | 199 | 255 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-8 | 200 | 256 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MDDGGDDTDP EFSPRTTPSS APARRPRQGL GVRGGPSKYR GVVWHKSNSK WEARIYEGGK 60 QKFLGYYTSE EAAAHAYDTY AVRLHGNLQK LNFPELYASG AEVYHDPGTP PPVKGTSRFR 120 GVSWNSNCAK WRAQVWKGSE VHHLGYFEGE EDAARAYDEA VLRIRGPDAP TNFPRSQYGA 180 FPVPGDHDFQ GGAAIGASGF RGVSWSDAHQ AWLAELWNGS RFQLLGSFRD EASAARRYDV 240 ACLELNGADA LTNFPLQSYE AELAAVALRA MAAEPGPLSP LLSLAWDGRQ QRWIPSGKQA 300 EEVYARSPTC SDSSSASHAA REQVAPGPSP LAPEAPGLHG MLPAEALQRV LGLLAANGGS 360 SAGWEAAVAL ARASQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011396127.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A087SC03 | 0.0 | A0A087SC03_AUXPR; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | A0A087SC03 | 0.0 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5740 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 4e-17 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 23614839 |