PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396016.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family NF-X1
Protein Properties Length: 473aa    MW: 49261 Da    PI: 8.1974
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396016.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.54.9e-07182201120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C   CH GpC pC +
  XP_011396016.1 182 CGRHACALACHAGPCTPCTR 201
                     ******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359033100IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0043842145178IPR000967Zinc finger, NF-X1-type
CDDcd060083.19E-7172247No hitNo description
SMARTSM004380.0015182201IPR000967Zinc finger, NF-X1-type
SMARTSM004385.7210228IPR000967Zinc finger, NF-X1-type
CDDcd060081.55E-7262311No hitNo description
SMARTSM004387.5273294IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MELALQGYND PQPHLLARVR EHLAECQDDA AVCLVCLETI ASAEAVWYCR GGCYVMTHLG  60
CAQSWARQQL DAADAKTIHS LGQIERDPGQ APPTWACPKC RHEYAASAIP RDYSCFCGKV  120
AEPAADPWLL AHSCGGTCGR PLPGCGHPCA LLCHPGHEVR QLPCSASGPY ACGAPCDKPL  180
ACGRHACALA CHAGPCTPCT RRCGVARGAC AHACPLACHP DACPVCVELV QQACHCGKST  240
LSIACAQLTG QESRPDRDLR SCGAVCLRTL PLCPHLCREP CHGGPCPGSG TCQELVTVRC  300
ACKATKQRMP CVEARALLAR SGREPRVEDG VALRLLPCSA ACRAKPGPAR SEAAAAKGPA  360
PPDEASGIPA AAGGPAAPKP RSGLLQRAAG EGGAVDDGKK IGHRVARPAG PSHPPAPSAR  420
ELRLRQQRQR VLVRAGLLVA VVLLVVGLAL CLTRLLAGAD AWARRAWGQP GAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396016.10.0NF-X1-type zinc finger protein NFXL2
TrEMBLA0A087SBP20.0A0A087SBP2_AUXPR; NF-X1-type zinc finger protein NFXL2
STRINGA0A087SBP20.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP530277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.12e-43sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors