PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011395897.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family Nin-like
Protein Properties Length: 285aa    MW: 30951.2 Da    PI: 10.1415
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011395897.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK551.6e-172772348
          RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
                    +ei+l++l+++++lp + A+  Lgv+lT+LKriCR +G++ WP+Rk
  XP_011395897.1 27 SEITLKELEACYHLPAQVACGRLGVGLTILKRICRAHGVAAWPYRK 72
                    68*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.4921296IPR003035RWP-RK domain
PfamPF020424.7E-162972IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MIMGEGDTGF GALKRSRKRT RAGRFSSEIT LKELEACYHL PAQVACGRLG VGLTILKRIC  60
RAHGVAAWPY RKQYKYELGD TPHPIADTPT RPPIPAFRGW TPPAALAAKP QDAARGAPPG  120
EAADGLRRRA LASLLSLVLQ RGTPGEGAAS AAVAAELARC LQHQACRAPA EVRDKAPLCG  180
EAWQPRDVAR PPAEDAWQPP AVGAWQQQLD AWQQPQHLDA SQQRNLDAWQ QVDCWSTGRV  240
MPPATAPAPQ HDWRRGVPAS TLAAARHDSR QYTHVRHLLA SVGRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395897.10.0hypothetical protein F751_0411
TrEMBLA0A087SBC30.0A0A087SBC3_AUXPR; Uncharacterized protein
STRINGA0A087SBC30.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.19e-08RWP-RK domain-containing protein