PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011395720.1

Organism

Auxenochlorella protothecoides

Taxonomic ID

3075

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

HB-other

Protein Properties

Length: 1653aa MW: 177460 Da PI: 6.1382

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011395720.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.3	1.9e-16	36	91	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r R + t+ q e+Le++Fe+nr+p++e+r+ LA++++Lte+qV +WFq rR++++k XP_011395720.1 36 RARPQKTPFQKETLEAAFEMNRHPTEEMRRVLAERIDLTEQQVGTWFQHRRQRKRK 91 788999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-18	22	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.21E-17	22	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.427	32	92	IPR001356	Homeobox domain
SMART	SM00389	1.8E-15	34	96	IPR001356	Homeobox domain
Pfam	PF00046	6.5E-14	36	91	IPR001356	Homeobox domain
CDD	cd00086	9.34E-17	36	92	No hit	No description
SMART	SM00571	0.0072	308	368	IPR018501	DDT domain
PROSITE profile	PS50827	12.395	308	368	IPR018501	DDT domain
Pfam	PF02791	5.2E-8	314	363	IPR018501	DDT domain
Pfam	PF05066	9.5E-13	446	513	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Gene3D	G3DSA:3.30.530.20	3.8E-21	1305	1454	IPR023393	START-like domain
PROSITE profile	PS50848	13.111	1327	1451	IPR002913	START domain
SuperFamily	SSF55961	4.18E-14	1327	1483	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 1653 aa Download sequence Send to blast
MWYGLLHRRL LALYRPPGAA EPQSGGGTYY TSSGQRARPQ KTPFQKETLE AAFEMNRHPT 60 EEMRRVLAER IDLTEQQVGT WFQHRRQRKR KEQVQQAVAQ AVLPGAPAYM AGKPGDGGPE 120 EDGKGAEDPA AVQELAALLE LAAAHLPVPF RPDGPPLALE HAEKSQKEQK KEEERRAREA 180 ARLKLLQEKE EKRLAALADK ERRAEERRRA LEERRKEKDQ LKALQQQEKA VLRLRVRDFG 240 TGPRDDADLE WEDLIAEYRT THGLPEDDFF PSEGDPAPEG LPPLPQRPQW PPADVALIPA 300 FPPELGGTEA GPGLLEAWSF LTSFSGELGL EPAPLDSLLA ALARGSRSPA LAAVHCGLLR 360 TLQADAEEAW AAGPASTYGG LESSAAAARL LEEAWAWGFD PDAWRAHLGA ATWPEPKMGR 420 EGEDVADDGA AGGGLRLKLP PRLGLGTVKA AAWAVLAEVG AAGLKVDEIA RRIQRRGLRD 480 LRSSRTPEAS VAGALGRDVL FARVDLGTYA LAAIVAYEAV EVVQSEAGEA GEGAEGAQPG 540 GEDAVEPAAA EEEEYSDDDE DGQRCDYDAL SWEHRVDMLR SLCLLAMQTP CIRDTMERRQ 600 EEQQRLKRQV WEDAKLPGSA DHGTSIASPD PGAGRIFFES GEDGALSIVR DAASLDALVG 660 ALERRGAREA GLYASLLRHR DALAAAMPAR PLALPPADDD LPAEERARLA AEHTAALQAC 720 GITRAGRART GAGWSPFAAG DSEEATKLKA DLLRIKDALA PEALAPGFDA GAWAARLLAP 780 GTPEDLRAAL GALEAALLPS ALSPLFPRAP AELLGGAWLP VGAGSAGAGG DGGDGAAGGE 840 AEGAGDKEHD APRGRSTTPA GSQPQLAWLP ATHASLALRV LSLDAALVPR PGEAPARQSL 900 EGYCRALRPA VVDGKQGRVV AGQPLGIGGR VRPVSFPPLP HKLLYGPRRE FAFPLAQFQR 960 DVVNNSDASI AVARPKGVGR GRGRGRGRGS ALAAAEGRRP GVSRATPRIV GSSKKERRAM 1020 LTQKSELAKE FENSGSGEWG NAWAGRDSER HYGTDFDEDQ EEFNAGGSAV PSAGGDLPSG 1080 APSALPSEDE AISDGACGRL TPRIVGSSKK ERRAMLTQKS ELAKEFENSG SGEWGNAWAG 1140 RDSERHYGTD FDEDQEEFNA GGPAAALTPE MEKVTGMVLD HALQWGAQML IVWFVGLSLG 1200 YLLPRPRWLQ KGLVWKELAL QTTTGSWFKR VTLALHALLV VREILLRLCP PGTFQAAWRS 1260 LWPSTQVSAF AAAAAVACVD DAADAPRLAL AAGSHAPPHP ADAEWWITES DWQVFRDACE 1320 GEGAPGQPRW EDMCRKEFPD CIYTAQRRTL HCGRTEYRST TVLRDAGAEA VMDFYLDDDV 1380 RAVWDPMISE HSLVESRAVA GNPGARCQVV RWLRTFPFAF ISSREYVLGR RVFRDAATGA 1440 LYGITRSVDH PGVRRCGRHD LGIPEHVARF AIRHGMVGFL KRMLPEARAF LARRAEKLDV 1500 DEPDPDAYAR RVAAGADGGC LLLSQAHGVA SQAHPLPPRA DADGAADSTE ASSWSSRGSS 1560 VSMPSMRRLG TMVLASSVAV LLARSGAKSS ASRRRRHRAE AVRLDALCLE SVAAAHAPAG 1620 ARAADAQLAA PMPRPVRRLR RRAALHAADA QSV

Sequence ? help Back to Top

Protein Sequence Length: 1653 aa Download sequence Send to blast

MWYGLLHRRL LALYRPPGAA EPQSGGGTYY TSSGQRARPQ KTPFQKETLE AAFEMNRHPT  60
EEMRRVLAER IDLTEQQVGT WFQHRRQRKR KEQVQQAVAQ AVLPGAPAYM AGKPGDGGPE  120
EDGKGAEDPA AVQELAALLE LAAAHLPVPF RPDGPPLALE HAEKSQKEQK KEEERRAREA  180
ARLKLLQEKE EKRLAALADK ERRAEERRRA LEERRKEKDQ LKALQQQEKA VLRLRVRDFG  240
TGPRDDADLE WEDLIAEYRT THGLPEDDFF PSEGDPAPEG LPPLPQRPQW PPADVALIPA  300
FPPELGGTEA GPGLLEAWSF LTSFSGELGL EPAPLDSLLA ALARGSRSPA LAAVHCGLLR  360
TLQADAEEAW AAGPASTYGG LESSAAAARL LEEAWAWGFD PDAWRAHLGA ATWPEPKMGR  420
EGEDVADDGA AGGGLRLKLP PRLGLGTVKA AAWAVLAEVG AAGLKVDEIA RRIQRRGLRD  480
LRSSRTPEAS VAGALGRDVL FARVDLGTYA LAAIVAYEAV EVVQSEAGEA GEGAEGAQPG  540
GEDAVEPAAA EEEEYSDDDE DGQRCDYDAL SWEHRVDMLR SLCLLAMQTP CIRDTMERRQ  600
EEQQRLKRQV WEDAKLPGSA DHGTSIASPD PGAGRIFFES GEDGALSIVR DAASLDALVG  660
ALERRGAREA GLYASLLRHR DALAAAMPAR PLALPPADDD LPAEERARLA AEHTAALQAC  720
GITRAGRART GAGWSPFAAG DSEEATKLKA DLLRIKDALA PEALAPGFDA GAWAARLLAP  780
GTPEDLRAAL GALEAALLPS ALSPLFPRAP AELLGGAWLP VGAGSAGAGG DGGDGAAGGE  840
AEGAGDKEHD APRGRSTTPA GSQPQLAWLP ATHASLALRV LSLDAALVPR PGEAPARQSL  900
EGYCRALRPA VVDGKQGRVV AGQPLGIGGR VRPVSFPPLP HKLLYGPRRE FAFPLAQFQR  960
DVVNNSDASI AVARPKGVGR GRGRGRGRGS ALAAAEGRRP GVSRATPRIV GSSKKERRAM  1020
LTQKSELAKE FENSGSGEWG NAWAGRDSER HYGTDFDEDQ EEFNAGGSAV PSAGGDLPSG  1080
APSALPSEDE AISDGACGRL TPRIVGSSKK ERRAMLTQKS ELAKEFENSG SGEWGNAWAG  1140
RDSERHYGTD FDEDQEEFNA GGPAAALTPE MEKVTGMVLD HALQWGAQML IVWFVGLSLG  1200
YLLPRPRWLQ KGLVWKELAL QTTTGSWFKR VTLALHALLV VREILLRLCP PGTFQAAWRS  1260
LWPSTQVSAF AAAAAVACVD DAADAPRLAL AAGSHAPPHP ADAEWWITES DWQVFRDACE  1320
GEGAPGQPRW EDMCRKEFPD CIYTAQRRTL HCGRTEYRST TVLRDAGAEA VMDFYLDDDV  1380
RAVWDPMISE HSLVESRAVA GNPGARCQVV RWLRTFPFAF ISSREYVLGR RVFRDAATGA  1440
LYGITRSVDH PGVRRCGRHD LGIPEHVARF AIRHGMVGFL KRMLPEARAF LARRAEKLDV  1500
DEPDPDAYAR RVAAGADGGC LLLSQAHGVA SQAHPLPPRA DADGAADSTE ASSWSSRGSS  1560
VSMPSMRRLG TMVLASSVAV LLARSGAKSS ASRRRRHRAE AVRLDALCLE SVAAAHAPAG  1620
ARAADAQLAA PMPRPVRRLR RRAALHAADA QSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	90	RRQRKRK
2	84	91	RRQRKRKE
3	979	988	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011395720.1	0.0	Homeobox protein unc-4-like protein
TrEMBL	A0A087SAV0	0.0	A0A087SAV0_AUXPR; Homeobox protein unc-4-like protein
STRING	A0A087SAV0	0.0	(Auxenochlorella protothecoides)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	2e-06	homeobox-1

Link Out ? help Back to Top
Entrez Gene	23616954