PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011395641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | MYB_related | ||||||||
Protein Properties | Length: 230aa MW: 25709.4 Da PI: 9.9567 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.6e-14 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky XP_011395641.1 107 PWTEEEHRLFLMGLAKYGKGDWRSISRNFVITRTPTQVASHAQKY 151 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.797 | 10 | 63 | IPR017877 | Myb-like domain |
SMART | SM00717 | 15 | 14 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00656 | 17 | 58 | No hit | No description |
PROSITE profile | PS51294 | 18.835 | 100 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.66E-17 | 101 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-12 | 104 | 154 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.6E-17 | 104 | 154 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.0E-12 | 105 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-11 | 107 | 152 | No hit | No description |
Pfam | PF00249 | 7.4E-13 | 107 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MLGGAGSSTP SGMVEEPWSK EEDKIFEDAL AHVWDRVDRC ERCATQLARR DVQSVRQRLE 60 QLERDVMSVE EGRVLLPNYA VPGESLSVAH LQKKVKSQET ERRKGIPWTE EEHRLFLMGL 120 AKYGKGDWRS ISRNFVITRT PTQVASHAQK YFIRLNSQSR KDKRRASIHD ITSPAPPEPS 180 LLAYGMGHHM AAPGMGMMHV TPGGVAAGVP VMHPGALAHH RAMLQQRMGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011395641.1 | 1e-171 | Transcription factor MYB1R1 | ||||
Swissprot | Q9FNN6 | 6e-51 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A087SAM2 | 1e-170 | A0A087SAM2_AUXPR; Transcription factor MYB1R1 | ||||
STRING | A0A087SAM2 | 1e-170 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 7e-53 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23614358 |
Publications ? help Back to Top | |||
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