PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 918840 | ||||||||
Common Name | ARALYDRAFT_918840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 25445.8 Da PI: 10.2302 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 92 | 136 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r ++++ q+ s+ qky 918840 92 PWTEEEHRTFLVGLEKLGKGDWRGISRNYVVTKSPTQVASHAQKY 136 8*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.362 | 84 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.92E-16 | 87 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-18 | 88 | 140 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-9 | 89 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 89 | 135 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.1E-11 | 92 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.94E-9 | 92 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRRCSHCGN VGHNSRTCSS YHTRVIRLFG VHLDTTSSSP PPPPPPSILA AAMKKSFSMD 60 CLPACSSSSS SFAGYLSDGL AHKTPDRKKG VPWTEEEHRT FLVGLEKLGK GDWRGISRNY 120 VVTKSPTQVA SHAQKYFLRQ TTTLHHKRRR TSLFDMVSAG NVEENSTIKS ICNDHIGSTS 180 KVVWKQGLLN PRLGYPDPKV TVSGSGNSGG GLDLELKLAS IQSPESNIRP ISVT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 918840 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519517 | 0.0 | AY519517.1 Arabidopsis thaliana MYB transcription factor (At5g56840) mRNA, complete cds. | |||
GenBank | BT012528 | 0.0 | BT012528.1 Arabidopsis thaliana At5g56840 gene, complete cds. | |||
GenBank | BT014956 | 0.0 | BT014956.1 Arabidopsis thaliana At5g56840 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864483.1 | 1e-174 | transcription factor MYBS3 | ||||
Swissprot | Q7XC57 | 5e-46 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | D7MM75 | 1e-172 | D7MM75_ARALL; DNA-binding family protein | ||||
STRING | scaffold_802240.1 | 1e-173 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5496 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-145 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | 918840 |
Entrez Gene | 9300559 |
Publications ? help Back to Top | |||
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