PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 918084 | ||||||||
Common Name | ARALYDRAFT_918084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 175aa MW: 19275.7 Da PI: 4.0957 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 168.2 | 1e-52 | 17 | 116 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 qlksfw+k++e + d+knhe+Pl+rik+i+k+d+dv+mi+aeaP+l+skace+fi+++t+rswlha+e kr t+kksd+aaav rt ifdfl+d+v ++e 918084 17 QLKSFWSKEMEGDLDLKNHEFPLSRIKRIMKFDPDVNMIAAEAPILFSKACEMFIMDVTMRSWLHAQERKRLTIKKSDVAAAVDRTLIFDFLLDVVNEEE 116 89**********************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.01E-29 | 2 | 108 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.3E-31 | 31 | 99 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.4E-19 | 36 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MENNNHQQPP QPQDNEQLKS FWSKEMEGDL DLKNHEFPLS RIKRIMKFDP DVNMIAAEAP 60 ILFSKACEMF IMDVTMRSWL HAQERKRLTI KKSDVAAAVD RTLIFDFLLD VVNEEEGESF 120 PAAADPVAVP CLDDGELPQG MVIGTPVCCG LPAWTAAPGE EEDADGENGG DSGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-36 | 24 | 112 | 5 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 918084 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865812.1 | 1e-127 | nuclear transcription factor Y subunit C-8 | ||||
Swissprot | Q4PSE2 | 2e-82 | NFYC8_ARATH; Nuclear transcription factor Y subunit C-8 | ||||
TrEMBL | D7MQ87 | 1e-126 | D7MQ87_ARALL; Uncharacterized protein | ||||
STRING | scaffold_801484.1 | 1e-126 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17675 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27910.1 | 2e-72 | nuclear factor Y, subunit C8 |
Link Out ? help Back to Top | |
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Phytozome | 918084 |
Entrez Gene | 9301886 |
Publications ? help Back to Top | |||
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