PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 918081 | ||||||||
Common Name | ARALYDRAFT_918081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 211aa MW: 23150.1 Da PI: 5.037 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 143.9 | 3.6e-45 | 46 | 144 | 1 | 99 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 q +++w+++ ++a+d+k++e+Plarikki+k+d +v++++aeaP+l+skace++il+lt++swlh+ e +r+tlk+sdi+aavtr +f+fl d+vprd 918081 46 QTQNYWIERTGNASDVKHNEFPLARIKKIMKSDANVQKVTAEAPILISKACEMLILDLTMQSWLHTVEGRRETLKRSDISAAVTRDLKFTFLGDVVPRD 144 5699*********************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.05E-23 | 53 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-17 | 65 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-28 | 66 | 143 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEENNGTNHH QWPQQSSSQQ LPPPSYSQPL PSPLYSLPPP YSLQTQTQNY WIERTGNASD 60 VKHNEFPLAR IKKIMKSDAN VQKVTAEAPI LISKACEMLI LDLTMQSWLH TVEGRRETLK 120 RSDISAAVTR DLKFTFLGDV VPRDPSVVTA YPVPKPHPEG EVLPPGMVIG HPVFGCNCTY 180 APPPQMQEWP AVPDDGEEAA EEIGGSSGGN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-30 | 47 | 143 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 121 | ETLKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 918081 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871301.1 | 1e-156 | nuclear transcription factor Y subunit C-7 | ||||
Swissprot | Q9FGP8 | 1e-97 | NFYC7_ARATH; Nuclear transcription factor Y subunit C-7 | ||||
TrEMBL | D7MQ84 | 1e-154 | D7MQ84_ARALL; Uncharacterized protein | ||||
STRING | scaffold_801481.1 | 1e-155 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20210 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50470.1 | 1e-78 | nuclear factor Y, subunit C7 |
Link Out ? help Back to Top | |
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Phytozome | 918081 |
Entrez Gene | 9301883 |
Publications ? help Back to Top | |||
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