PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 917880 | ||||||||
Common Name | ARALYDRAFT_917880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 182aa MW: 20906.5 Da PI: 6.6557 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.2 | 1.1e-12 | 94 | 160 | 3 | 74 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 Y++Y+ + GF+vrk++ +k+ ++++++ +vCsk+g+r+e k ++ +++ tr+gC+a+++ ++k+g 917880 94 YKQYGGNHGFNVRKQRRTKK--QEKVVRLLYVCSKQGYRKEPKVI---KSYSQPITRCGCNAHMTCYLQKSG 160 9************9986665..8889***************9877...999*************99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-9 | 94 | 160 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MESSHLNGHE IVRDSHYGSI LQVSDESGLL CQNSISEDEA SVSEFEEEDD IANKDDYVQT 60 EEVVALEENK VNEKKDELCI GMEFSSDEAA YIAYKQYGGN HGFNVRKQRR TKKQEKVVRL 120 LYVCSKQGYR KEPKVIKSYS QPITRCGCNA HMTCYLQKSG CVQMKMPFTC LRNWREKKRN 180 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 917880 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010418903.1 | 1e-68 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | D7MN81 | 1e-132 | D7MN81_ARALL; Uncharacterized protein | ||||
STRING | scaffold_801280.1 | 1e-133 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6200 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-09 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | 917880 |
Entrez Gene | 9300039 |