PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 917448 | ||||||||
Common Name | ARALYDRAFT_917448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 243aa MW: 27678.1 Da PI: 8.7229 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.2 | 8e-28 | 62 | 114 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k +Y eC+kNhAa++G++a+DGCgEf++s+g + ++l+CaACgCHRnFHR e+ 917448 62 KPHYGECRKNHAADIGTTAYDGCGEFVSSTG---EEDSLNCAACGCHRNFHREESI 114 679*************************955...56****************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 2.8E-27 | 64 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-22 | 64 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.41 | 65 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-23 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-21 | 174 | 241 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.97E-12 | 179 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-31 | 184 | 240 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDEIIKPKKE ENSKRRRNAT AICRETGDHV HYPPTRRTKP KSTRAHHAPP PIIESILKVN 60 HKPHYGECRK NHAADIGTTA YDGCGEFVSS TGEEDSLNCA ACGCHRNFHR EESIPENGGV 120 TETVLEVLKI SSYQFRRIFC SPYGGGKSKG KKESYGGDRV VKDRFGGGDL AAEEEEEEEV 180 GRVKRLKTKF TAEQTEKMRG YAEKLRWKVR PEKREEVEEF CVEIGVNRKN FRIWMNNHKD 240 NN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-13 | 183 | 241 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 917448 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007647 | 1e-174 | AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21. | |||
GenBank | BT002832 | 1e-174 | BT002832.1 Arabidopsis thaliana clone RAFL14-80-P06 (R20240) unknown protein (At5g42780) mRNA, complete cds. | |||
GenBank | BT004379 | 1e-174 | BT004379.1 Arabidopsis thaliana clone U20240 unknown protein (At5g42780) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-174 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | LN852659 | 1e-174 | LN852659.1 Arabidopsis thaliana mRNA for homeobox protein 27 (AtHB27 gene), ecotype Columbia. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865484.1 | 1e-180 | zinc-finger homeodomain protein 13 | ||||
Swissprot | Q9FMY7 | 1e-133 | ZHD13_ARATH; Zinc-finger homeodomain protein 13 | ||||
TrEMBL | D7MRF4 | 1e-179 | D7MRF4_ARALL; ATHB27 | ||||
STRING | scaffold_800848.1 | 1e-179 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15888 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 1e-123 | homeobox protein 27 |
Link Out ? help Back to Top | |
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Phytozome | 917448 |
Entrez Gene | 9299814 |