PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917370
Common NameARALYDRAFT_917370
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 280aa    MW: 32796.5 Da    PI: 9.8002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.98e-05222244123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              y+Cp+C+ +F ++  +  H+ +H
   917370 222 YTCPKCNGVFDTSQRFAAHMLSH 244
              9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.432222249IPR007087Zinc finger, C2H2
SMARTSM003550.0079222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSFNLNRFNI YGDDFINHRM NHEDLFDSPP SFSSYQNSHA SSFSFQINNS HMNYHMMRRN  60
FDSFSGAKYF SIQNNSHITQ ISFTETITNR YTTIVPTNTL DNFQHEIKRV KRSMDSNTNI  120
WNPVSYPQIF FDNQCEILNP TPLSVIYPRQ HSAALHHSDF SSFTSKCNHV PHASRSSKKI  180
SKPTNLFERT TYYVHSEEDE KSDDNQYDGR THSIPYVKYG PYTCPKCNGV FDTSQRFAAH  240
MLSHYNSETN KEKALRFRAR NKRKFRKLMA GQKISKQRM*
Cis-element ? help Back to Top
SourceLink
PlantRegMap917370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865449.10.0uncharacterized protein LOC9301523
TrEMBLD7MQ020.0D7MQ02_ARALL; Uncharacterized protein
STRINGscaffold_800770.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.11e-103C2H2 family protein