PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 917368 | ||||||||
Common Name | ARALYDRAFT_917368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 20896.5 Da PI: 9.0124 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00076 | 74 | 92 | 1 | 19 |
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 ykC+ C k+Fs+ L H 917368 74 YKCGVCYKTFSSYQALGGH 92 9**********98877555 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.0007 | 116 | 135 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ CgksF + L H 917368 116 HVCSVCGKSFATGQALGGHK 135 79********9988776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 83 | 74 | 94 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-9 | 74 | 95 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.32E-8 | 74 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 114 | 138 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.051 | 116 | 138 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.4E-12 | 116 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.346 | 116 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MALEALNSPR LVDDSSRFNG VEQWTKGKKR SKRSRTDHHN NRLTEEEYLA FCLMLLARDG 60 GDLDSVTAKE KPGYKCGVCY KTFSSYQALG GHKASQQGLY GGGDIDKTLS TAVKSHVCSV 120 CGKSFATGQA LGGHKRCHYD SGVSNSEGVG STSHVSSSSH RRFDLNITPV QEFSLEDEVM 180 SPMAMKKPRL K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 917368 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008267 | 0.0 | AB008267.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863688.1 | 1e-141 | zinc finger protein AZF3 | ||||
Swissprot | Q9SSW0 | 1e-111 | AZF3_ARATH; Zinc finger protein AZF3 | ||||
TrEMBL | D7MQ00 | 1e-140 | D7MQ00_ARALL; Uncharacterized protein | ||||
STRING | scaffold_800768.1 | 1e-141 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43170.1 | 1e-101 | zinc-finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | 917368 |
Entrez Gene | 9301522 |
Publications ? help Back to Top | |||
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