PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 917307 | ||||||||
Common Name | ARALYDRAFT_917307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 133aa MW: 14478.8 Da PI: 6.8121 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 2.9e-21 | 14 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g r++lg+f+taeeAa+a+++a+ +++g 917307 14 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 64 8********.**********65443..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.24E-27 | 14 | 73 | No hit | No description |
SuperFamily | SSF54171 | 4.84E-24 | 14 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-33 | 14 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.105 | 14 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-16 | 14 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-37 | 14 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0010186 | Biological Process | positive regulation of cellular defense response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090332 | Biological Process | stomatal closure | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MDQGGRGGGA EHGKYRGVRR RPWGKYAAEI RDSRKHGERV WLGTFDTAEE AARAYDQAAY 60 SMRGQSAILN FPHEYNMGST GGSSSTAMAG SSSSSASASS SSREVFEFEY LDDSVLEELL 120 EEEEKPKKGK KK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-64 | 1 | 132 | 1 | 131 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00029 | PBM | Transfer from AT5G43410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 917307 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025638 | 1e-153 | AB025638.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20. | |||
GenBank | AY560864 | 1e-153 | AY560864.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g43410) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-153 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ447034 | 1e-153 | DQ447034.1 Arabidopsis thaliana clone pENTR221-At5g43410 ethylene-responsive factor (At5g43410) mRNA, complete cds. | |||
GenBank | DQ653344 | 1e-153 | DQ653344.1 Arabidopsis thaliana clone 0000013355_0000009642 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863652.1 | 1e-91 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LSX0 | 6e-64 | ERF96_ARATH; Ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | D7MP65 | 3e-90 | D7MP65_ARALL; Uncharacterized protein | ||||
STRING | scaffold_800707.1 | 5e-91 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 1e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 917307 |
Entrez Gene | 9301501 |
Publications ? help Back to Top | |||
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