PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917293
Common NameARALYDRAFT_917293
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 138aa    MW: 15385.2 Da    PI: 9.3332
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917293genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-053557123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C+ C++ F++   L  H++ H
   917293 35 YECTFCKRGFTNAQALGGHMNIH 57
             99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-51960IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-73262No hitNo description
SMARTSM003550.00973557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1363562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEIERSSSST SSETGAVRHR RTASSSVSTV TRRMYECTFC KRGFTNAQAL GGHMNIHRRD  60
RLNKAKVQND ADVALSQTHR CFHVASDRGG YEQVDSVVLR TTTSNYIQHL RIGSMATRRE  120
NVVVEGDEID LELRLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap917293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168750.0AB016875.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9D7.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865417.11e-96uncharacterized protein LOC9301491
TrEMBLD7MP513e-95D7MP51_ARALL; Zinc finger family protein
STRINGscaffold_800693.16e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-74C2H2 family protein