PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 917204 | ||||||||
Common Name | ARALYDRAFT_917204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 465aa MW: 51171.2 Da PI: 8.3845 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.1e-05 | 66 | 86 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H 917204 66 CEICGKGFQRDQNLQLHRRGH 86 *******************88 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C k++ +s+ k H +t+ 917204 140 WKCEKCAKRYAVQSDWKAHSKTC 162 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.98E-6 | 63 | 86 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.98E-6 | 135 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MTSEVLQTIS SGSGFAQSSS TLDHDESLIN PPLVKKKRNL PGNPDPEAEV IALSPKTLMA 60 TNRFLCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK TCVHHHSSRA 120 LGDLTGIKKH FCRKHGEKKW KCEKCAKRYA VQSDWKAHSK TCGTREYRCD CGTIFSRRDS 180 FITHRAFCDA LAEETAKINA VSHLNGLAAA GAAGSVNLNY QYLMGTFIPP LQPFVPQPQT 240 NQNHHHQHFQ PPPPSSLSLW MGQDIAPPQP QPQDYDWVFG NAKAASACID NNNTHDEHIT 300 QNANASLTTT TTLSVPSLFS NDQPQNANAN SNVNMSATAL LQKAAEIGVT STTTAATNDQ 360 STFLQSFPLK SSDQTTTYDG GEKFFALFGS NNNIGLMSHS HNHQEIENPR NDVTVESALD 420 ELQNYPWKRR RVDGGGGAGG GQTRDFLGVG VQTLCHPSSI NGWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 136 | 205 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 136 | 205 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 427 | 431 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 917204 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY037202 | 0.0 | AY037202.1 Arabidopsis thaliana AT5g44160/MLN1_8 mRNA, complete cds. | |||
GenBank | BT002685 | 0.0 | BT002685.1 Arabidopsis thaliana At5g44160/MLN1_8 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865381.1 | 0.0 | zinc finger protein NUTCRACKER | ||||
Swissprot | Q9FFH3 | 0.0 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | D7MN23 | 0.0 | D7MN23_ARALL; Zinc finger family protein | ||||
STRING | scaffold_800604.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 917204 |
Entrez Gene | 9301455 |
Publications ? help Back to Top | |||
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