PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 916318 | ||||||||
Common Name | ARALYDRAFT_916318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 337aa MW: 38528.1 Da PI: 7.9628 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79 | 3.3e-25 | 19 | 68 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + +++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++ 916318 19 SCSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 68 6789********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.001 | 1 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51257 | 5 | 1 | 20 | No hit | No description |
CDD | cd00266 | 1.38E-18 | 27 | 94 | No hit | No description |
Pfam | PF00319 | 4.4E-14 | 27 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.601 | 28 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-15 | 28 | 102 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MTIRSLPSSS CCSSSSSSSC SSYSLASTSL SNRLETIFKK ASELCTLCDI EACVIYYGPD 60 GELKTWPKER EKVRDIALRY SQLNEALRRK KRVNLYDFLN KKKEKGLKNP NKRRKTSLKK 120 VNVLKYPISD HYSPDQISKL IQSLELNVSK VQERLRFVES QKHKETKPDH QSLASSSLNH 180 QTQSLNPSQF SLFIYNHGDN TLSQIPLSAS NFNPDLLQES GLMKQELCGY DQNMFMSDIT 240 NNKFQHPCVS NTEHYSVVPE PVNNYGLNQL MQDFYGCDQN LSNINSNNFQ HSFVSNTQHY 300 SAVQESVNDY GLMPHELYGY DHNMFTSEIY QQQPSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 114 | KKKEKGLKNPNKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 916318 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB010072 | 0.0 | AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6. | |||
GenBank | BT030016 | 0.0 | BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870726.2 | 0.0 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 1e-149 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | D7MJH9 | 0.0 | D7MJH9_ARALL; Uncharacterized protein | ||||
STRING | scaffold_704060.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 1e-147 | AGAMOUS-like 75 |
Link Out ? help Back to Top | |
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Phytozome | 916318 |
Entrez Gene | 9304770 |
Publications ? help Back to Top | |||
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