PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

916307

Common Name

ARALYDRAFT_916307

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 93aa MW: 10557.9 Da PI: 8.5137

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
916307	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.7	3.7e-07	24	59	20	54
HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Lr++lP+ + +s K+s + +L+++++YI++L 916307 24 VTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRNL 59 579*****999*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.953	4	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-7	19	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-7	22	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	23	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSNRRSRQSS SAPRISDDQM IDLVTKLRQI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN 60 REVDNLSERL SQLLESVDED SPEAAVIRSL LM*

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	916307

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088246	1e-138	AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870750.1	3e-58	transcription factor PRE1
Refseq	XP_006405588.1	3e-58	transcription factor PRE1
Swissprot	Q9LJX1	9e-52	PRE5_ARATH; Transcription factor PRE5
TrEMBL	D7MJG8	6e-57	D7MJG8_ARALL; Uncharacterized protein
TrEMBL	V4NKZ4	6e-57	V4NKZ4_EUTSA; Uncharacterized protein
STRING	scaffold_704049.1	1e-57	(Arabidopsis lyrata)
STRING	XP_006405588.1	1e-57	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM259	28	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	4e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	916307
Entrez Gene	9306820