PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 915109
Common NameARALYDRAFT_915109
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 468aa    MW: 52145.7 Da    PI: 7.0436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
915109genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12320366455
             HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  915109 320 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 366
             799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4150226IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17316382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-14319370No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16320382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGPKFWENQE DRAMVESTIG SEACDFFIST ASASNTALTK LVSPPSDSNL QQGLRHVVEG  60
SDWDYAIFWL ASNVNSSDGC VLIWGDGHCR VKKGVSGEDY SQQDETKRRV LRKLHLSFVG  120
SDEDHRLVKS GALNDLDMFF LASLYFSFRC DSNKYGPAGT YVSGKPLWAA DLPSCLSYYR  180
VRSFLGRSAG FQTVLSVPVN SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI  240
FGRQLSLGGS KPRSMSINFS PKTEDGTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD  300
EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT  360
YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD AVVRLSCPLE THPVSKVIQT  420
LRENEVMPHD SNVAVTEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-26314376264Transcription factor MYC2
5gnj_B6e-26314376264Transcription factor MYC2
5gnj_E6e-26314376264Transcription factor MYC2
5gnj_F6e-26314376264Transcription factor MYC2
5gnj_G6e-26314376264Transcription factor MYC2
5gnj_I6e-26314376264Transcription factor MYC2
5gnj_M6e-26314376264Transcription factor MYC2
5gnj_N6e-26314376264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap915109
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283680.0AF428368.1 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds.
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870159.10.0transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLD7M9V30.0D7M9V3_ARALL; Basic helix-loop-helix family protein
STRINGscaffold_702851.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]