PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914977
Common NameARALYDRAFT_914977
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 315aa    MW: 36851 Da    PI: 9.1356
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914977genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind483.3e-1511992100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk ye+++d++++++isws ng sfvvl++ e ++++L++  + +nf+ F    + YgF+k++ + ++        eF+ + F +gk ell+ki 
        914977  11 FLKKAYELVDDPSTDSIISWSPNGLSFVVLKPLECSRDLLTRRLQITNFSPF----QSYGFRKIDISPGQ------ELEFACDDFVRGKPELLDKIA 97 
                   9**************************************************9....58*******99987......79******************8 PP

                   XX CS
  HSF_DNA-bind  99 rk 100
                   ++
        914977  98 QR 99 
                   87 PP
2HSF_DNA-bind53.94.9e-171712592100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk y +++d+++++++sw  ng sfvv+++ ef+k++Lp++ + ++fa F    ++YgF+k+  ++++      + eF  + F +gk ell+ki 
        914977 171 FLKKAYALVDDPSTDSIVSWAPNGLSFVVWQPLEFTKDLLPRHLQITHFAKF----HTYGFSKLVISSGQ------QLEFMCNDFVRGKPELLDKIA 257
                   9*******************************************99999987....8*******999987......79******************9 PP

                   XX CS
  HSF_DNA-bind  99 rk 100
                   ++
        914977 258 QR 259
                   87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.7E-24799IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.47E-16897IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-18998IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.2E-141198IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004153.3E-22167259IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-17167257IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-20170258IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-15171258IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-6171194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-6209221IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDYGRNVISD FLKKAYELVD DPSTDSIISW SPNGLSFVVL KPLECSRDLL TRRLQITNFS  60
PFQSYGFRKI DISPGQELEF ACDDFVRGKP ELLDKIAQRY LARLKAYHDS KYGELDKRLK  120
SATTREEYEL AIKEHREKWE RESRDRKART RVTSTIPYQD FAFGRNDIFD FLKKAYALVD  180
DPSTDSIVSW APNGLSFVVW QPLEFTKDLL PRHLQITHFA KFHTYGFSKL VISSGQQLEF  240
MCNDFVRGKP ELLDKIAQRY VARMKDTELW KIDERLENAT SKEEYDLAMK DKEEMFARKS  300
KERKAIMATR RKST*
Cis-element ? help Back to Top
SourceLink
PlantRegMap914977
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868068.10.0heat stress transcription factor A-4a
TrEMBLD7MBZ40.0D7MBZ4_ARALL; Uncharacterized protein
STRINGscaffold_702719.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.12e-34HSF family protein