PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914801
Common NameARALYDRAFT_914801
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 424aa    MW: 49595.6 Da    PI: 6.7035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914801genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.6e-18213259148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd  l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
           914801 213 KGQWTSEEDRVLIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 259
                      799*****************************.*************97 PP
2Myb_DNA-binding52.11.5e-16265307145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
           914801 265 KETWSEEEDRVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 307
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.829208263IPR017930Myb domain
SuperFamilySSF466892.62E-32211306IPR009057Homeodomain-like
SMARTSM007171.0E-16212261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-27214264IPR009057Homeodomain-like
CDDcd001677.12E-15216259No hitNo description
PfamPF139211.1E-19216273No hitNo description
PROSITE profilePS5129421.16264314IPR017930Myb domain
SMARTSM007174.8E-16264312IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-22265312IPR009057Homeodomain-like
CDDcd001675.05E-12267310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MENFVDENAF VPLNQNIFTR DQEHMKEEDF PFEVVDQSKP ISFLQDFHHL DHHHQFDHHH  60
HGSSSSHPLL GHQATSSCIN NAPFQHCSYQ ENMSEFYETK PHLMNHHFQA AENSYFTHNN  120
HHQEINMVDE HDPMDLDQNN MMMMRMIPFD YPPTETFKPM NFVMPDEISC VSADNDCYRA  180
TSFNKTKPFL TRKLSSSSSS SSWKENKKST LVKGQWTSEE DRVLIQLVEK YGLRKWSHIA  240
QVLPGRIGKQ CRERWHNHLR PDIKKETWSE EEDRVLIEFH KEIGNKWAEI AKRLPGRTEN  300
SIKNHWNATK RRQFSKRKCR SKYPRPSLLQ DYIKSLNMGV LSASSVPARG RRRESNKKKD  360
VVVAAVEEKK KEEEIYGQDR IVPECVFTDD FGFNEKLLEE GCSIDSLLDD IPQPDIDAFV  420
HGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-4421131456159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4421131456159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-452113132104C-Myb DNA-Binding Domain
1msf_C5e-452113132104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap914801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1760030.0AF176003.2 Arabidopsis thaliana putative transcription factor (MYB98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870023.10.0transcription factor MYB98
SwissprotQ9S7L20.0MYB98_ARATH; Transcription factor MYB98
TrEMBLD7M9F30.0D7M9F3_ARALL; Myb family transcription factor
STRINGscaffold_702543.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.10.0myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]