PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

913634

Common Name

ARALYDRAFT_913634

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 1781aa MW: 197162 Da PI: 7.2671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
913634	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.3	7.4e-15	141	188	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn +ErrRR++iN+++ +L+el+P + K +K+++L A+eY+k Lq 913634 141 EMHNLAERRRREKINEKMKTLQELIPRC-----NKSTKVSTLDAAIEYVKWLQ 188 58***********************8.....699***********9887 PP
2	HLH	46.3	7.6e-15	588	634	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +hn +ErrRR++iN+ + +L+el+P + K +K+++L A+eY+k Lq 913634 588 MHNLAERRRREKINENIKTLQELIPRC-----NKSTKVSTLDDAIEYVKWLQ 634 7***********************8.....699***********9887 PP
3	HLH	48.1	2.1e-15	1145	1192	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn +ErrRR++iN+++ +L+el+P + K +K+++Le ++eY+ksLq 913634 1145 EMHNLAERRRREKINEKMKTLQELIPRC-----NKSTKVSTLEDVIEYMKSLQ 1192 58***********************8.....699**************9 PP
4	HLH	46.5	6.4e-15	1575	1622	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn +ErrRR++iN+++ +L+el+P + K +K+++Le ++eY+ksL+ 913634 1575 EMHNLAERRRREKINEKMKTLQELIPRC-----NKSTKVSTLEDVIEYVKSLE 1622 58***********************8.....699*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-18	136	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.326	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-15	141	192	No hit	No description
Pfam	PF00010	3.4E-12	141	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-18	142	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-18	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-15	580	638	No hit	No description
SuperFamily	SSF47459	8.37E-19	582	650	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.831	584	633	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-19	588	643	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-12	588	634	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-17	590	639	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-18	1140	1209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.396	1142	1191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.28E-15	1145	1196	No hit	No description
Pfam	PF00010	6.3E-13	1145	1192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-20	1146	1207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-15	1148	1197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-16	1570	1633	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.352	1572	1621	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.75E-14	1575	1626	No hit	No description
Pfam	PF00010	2.6E-12	1575	1622	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-18	1576	1630	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-15	1578	1627	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1781 aa Download sequence Send to blast
MEILWKSRQV VRTSQTQRPS PPPILRGSGS GSGSRGGEEN ALLPLPLPHP PPPLPQPPPH 60 QEEEMVSWLH HHLRQDYVCS KIIYSIPATN PQSSFSLEPP PLPPSAPYIL PASRLTCQLR 120 GVQGTEEARG STSRKRSRAA EMHNLAERRR REKINEKMKT LQELIPRCNK STKVSTLDAA 180 IEYVKWLQSQ IQMILMGQGM MPSMMNEENM QEFMPHMAMK MMGMNRPPFI PSPGTPFPSP 240 AQIAGVGPSQ AYPAARYPFP NIQTFDPSRV RLPSPVVNQT HFPAYMNPYS HFVGHHQMLQ 300 PPPPLQSQTT PQLSSGQASS SKEPEDKDSQ PKEFGFWFEI RGEDDIVELL WKSGRVVQSS 360 QTQRPSSDPP PILRGSGSGG GEEEENAPLP PPPPLPPLHH QNLFIQEDEM YSWLHQSYRQ 420 DYLCSELRYS GVASNPATHP QSSISPAPCP FAPYDQRGQT IATRRVENFM NFSWLRGNIF 480 TGGRVEAGVV RESIQLGSST TPSSSATESC VIPATEGTES RVSQTLAVPG LGQKGKAVVI 540 ETAETPSSGV CKAETEPVQI QPATIVEIQG TEEARGSMSR KRSRTAEMHN LAERRRREKI 600 NENIKTLQEL IPRCNKSTKV STLDDAIEYV KWLQSQIQMM STGQGMMPPM MYAGNTQQFM 660 PHMAMDMNRP PPFIPFPDTP FPRPAQMADV DPSYPAPRYP LSGIQTFDPS RVHLRSPQPN 720 PVSNQPQFPA YMNPYSQFAG LHQLQQPPPP PFQIRGEDDI VELLWKSGQL VRTTQTQRPS 780 SDKPSSPPPV LRGSGSGGGD ENAPLPLPLP QPPPPLHHQN LFIQEDELSS WLHNFYPGVT 840 STPATHPQSS VSLPPPSNAP YISSFFLHSL AFCNLMSLIL EFGFWIEIRG EDDVVELLWK 900 SSQVVQCSQT QRSIPPPIFR GSGSRSGEET ALPPPPLHPS QQILFIQEDE IASWLYHPLL 960 QDYLSSGVTS TPATHRQGSV SLAPPPPLSA PYGQITAARR TDNFMNFLRL KGNILTGGRV 1020 EAGPVVIEST QVGSSATPSS SATESCVIPV THGTESRATV IGGVSRTFAV PGFGRRGKAV 1080 AIDTAGTSSS GVCKAETEPV RIQPETETEI AEDRKQKERE ETIVEIQGTE EARGSTSRKR 1140 SRAAEMHNLA ERRRREKINE KMKTLQELIP RCNKSTKVST LEDVIEYMKS LQMQIQMMSM 1200 GHGMMPPMMN AENMQQFMPH MAMGMNRPPP FIHFPGTAFP RPGHMAGVGP SYPASRYPFP 1260 NTQASDPPRV QLPSLETDNP VPNQPLFPAY MNPYSQFVGL HQMQQPPPPL QVLGFRLKNR 1320 GEDDIVELFW KIGQVVRSSQ TEIPSSDPTP ILRGRGSRGG EENVPLPPPL PPPHHQNLFI 1380 QEDDMSSWIH HHPLLQDYLC SQLYASTPAP HPQSSVPLAP PQSSAPYGQI IIAPRREENV 1440 MNFLRLRGNI LTGGSVEAGP WIPVGSSATT SLSATESNLT PATESLPTVT GGVFHTFSVP 1500 SRGGKEKAVA IQTVCEIAGT SSSGVETEPV RIQPATETDI ADGRERKERE ETIAGIQGTE 1560 EARGSTSRKR SRAAEMHNLA ERRRREKINE KMKTLQELIP RCNKSTKVST LEDVIEYVKS 1620 LEMQIQHYVM NFRIMTEVLI SESMLLCKMM STGCSTMPMM YTSNTQQFMP HMAMGMNQTP 1680 AFIPFPRQAH MAGVGPSYLP PHNPFPNIQT FDPSRVWLQS PQPNPVPNQP QMNPYSQFVG 1740 HHQMQQPTFP PLQSQTTSQL SFGQASSSKE PDDQNNQPQG *

Sequence ? help Back to Top

Protein Sequence Length: 1781 aa Download sequence Send to blast

MEILWKSRQV VRTSQTQRPS PPPILRGSGS GSGSRGGEEN ALLPLPLPHP PPPLPQPPPH  60
QEEEMVSWLH HHLRQDYVCS KIIYSIPATN PQSSFSLEPP PLPPSAPYIL PASRLTCQLR  120
GVQGTEEARG STSRKRSRAA EMHNLAERRR REKINEKMKT LQELIPRCNK STKVSTLDAA  180
IEYVKWLQSQ IQMILMGQGM MPSMMNEENM QEFMPHMAMK MMGMNRPPFI PSPGTPFPSP  240
AQIAGVGPSQ AYPAARYPFP NIQTFDPSRV RLPSPVVNQT HFPAYMNPYS HFVGHHQMLQ  300
PPPPLQSQTT PQLSSGQASS SKEPEDKDSQ PKEFGFWFEI RGEDDIVELL WKSGRVVQSS  360
QTQRPSSDPP PILRGSGSGG GEEEENAPLP PPPPLPPLHH QNLFIQEDEM YSWLHQSYRQ  420
DYLCSELRYS GVASNPATHP QSSISPAPCP FAPYDQRGQT IATRRVENFM NFSWLRGNIF  480
TGGRVEAGVV RESIQLGSST TPSSSATESC VIPATEGTES RVSQTLAVPG LGQKGKAVVI  540
ETAETPSSGV CKAETEPVQI QPATIVEIQG TEEARGSMSR KRSRTAEMHN LAERRRREKI  600
NENIKTLQEL IPRCNKSTKV STLDDAIEYV KWLQSQIQMM STGQGMMPPM MYAGNTQQFM  660
PHMAMDMNRP PPFIPFPDTP FPRPAQMADV DPSYPAPRYP LSGIQTFDPS RVHLRSPQPN  720
PVSNQPQFPA YMNPYSQFAG LHQLQQPPPP PFQIRGEDDI VELLWKSGQL VRTTQTQRPS  780
SDKPSSPPPV LRGSGSGGGD ENAPLPLPLP QPPPPLHHQN LFIQEDELSS WLHNFYPGVT  840
STPATHPQSS VSLPPPSNAP YISSFFLHSL AFCNLMSLIL EFGFWIEIRG EDDVVELLWK  900
SSQVVQCSQT QRSIPPPIFR GSGSRSGEET ALPPPPLHPS QQILFIQEDE IASWLYHPLL  960
QDYLSSGVTS TPATHRQGSV SLAPPPPLSA PYGQITAARR TDNFMNFLRL KGNILTGGRV  1020
EAGPVVIEST QVGSSATPSS SATESCVIPV THGTESRATV IGGVSRTFAV PGFGRRGKAV  1080
AIDTAGTSSS GVCKAETEPV RIQPETETEI AEDRKQKERE ETIVEIQGTE EARGSTSRKR  1140
SRAAEMHNLA ERRRREKINE KMKTLQELIP RCNKSTKVST LEDVIEYMKS LQMQIQMMSM  1200
GHGMMPPMMN AENMQQFMPH MAMGMNRPPP FIHFPGTAFP RPGHMAGVGP SYPASRYPFP  1260
NTQASDPPRV QLPSLETDNP VPNQPLFPAY MNPYSQFVGL HQMQQPPPPL QVLGFRLKNR  1320
GEDDIVELFW KIGQVVRSSQ TEIPSSDPTP ILRGRGSRGG EENVPLPPPL PPPHHQNLFI  1380
QEDDMSSWIH HHPLLQDYLC SQLYASTPAP HPQSSVPLAP PQSSAPYGQI IIAPRREENV  1440
MNFLRLRGNI LTGGSVEAGP WIPVGSSATT SLSATESNLT PATESLPTVT GGVFHTFSVP  1500
SRGGKEKAVA IQTVCEIAGT SSSGVETEPV RIQPATETDI ADGRERKERE ETIAGIQGTE  1560
EARGSTSRKR SRAAEMHNLA ERRRREKINE KMKTLQELIP RCNKSTKVST LEDVIEYVKS  1620
LEMQIQHYVM NFRIMTEVLI SESMLLCKMM STGCSTMPMM YTSNTQQFMP HMAMGMNQTP  1680
AFIPFPRQAH MAGVGPSYLP PHNPFPNIQT FDPSRVWLQS PQPNPVPNQP QMNPYSQFVG  1740
HHQMQQPTFP PLQSQTTSQL SFGQASSSKE PDDQNNQPQG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1567	1584	RKRSRAAEMHNLAERRRR
2	1580	1585	ERRRRE
3	1581	1586	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	913634

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035353	0.0	AL035353.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16A16 (ESSAII project).
GenBank	AL161573	0.0	AL161573.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020873893.1	0.0	transcription factor bHLH119
Swissprot	Q8GT73	0.0	BH119_ARATH; Transcription factor bHLH119
TrEMBL	D7MD82	0.0	D7MD82_ARALL; Uncharacterized protein
STRING	scaffold_701376.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9041	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28811.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	913634
Entrez Gene	9303509

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]