PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913602
Common NameARALYDRAFT_913602
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 407aa    MW: 44471.4 Da    PI: 6.8266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913602genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000542673021555
             HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  913602 267 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 302
             5556788888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-5262306No hitNo description
SuperFamilySSF474596.41E-10262313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-7267309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APLPPHMTPN NNYLRPRMMP  60
TPLPHFLPSP ATSSSSSSSP SLPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERL  120
EMMNHHNHHD EPHHHSFQGK MRLENWEEQV LSHQQAAMVA ADIKQESNIN NNNGYVISSP  180
NSPPNKSCVT TTTTTSLNSN DDNINNNNNM LDFSSNHNGL HLSEGRHTPP DRSSECNSLE  240
IGGSTNKKPR LQPSPSSQST LKVRKEKLGG RIAALHQLVS PFGKTDTASV LSEAIGYIRF  300
LQSQIEALSH PYFGTTASGN LRHQQHLQGD RSCIFPEDPG QLVNDQCMKR RGASSSSTEN  360
QNASEEPKKD LRSRGLCLVP ISCTLQVGSD NGADYWAPAL GSAGFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMap913602
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886340.0AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0813160.0AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBankBT0001210.0BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869453.10.0transcription factor bHLH68 isoform X1
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLD7MD510.0D7MD51_ARALL; Uncharacterized protein
STRINGscaffold_701344.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]