PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

913300

Common Name

ARALYDRAFT_913300

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 633aa MW: 71207 Da PI: 9.0769

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
913300	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62	1e-19	22	97	11	94
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + s+ l +p kf+++h + k+e+kt+ l++ s r+W+vk+ ++++ ltkGWkeFvka++L++ DfvvF+++g++ f +v 913300 22 FDSH-LNIPVKFFSDHiK-GKHEGKTVNLRSdASERTWKVKM--EGNR----LTKGWKEFVKAHDLRVSDFVVFRHEGEMLF--NV 97 5555.99*******64.456889*97889***..9998....*********************9887766..44 PP
2	B3	69.6	4.3e-22	154	247	4	99
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++l+++ + +p +fa+++g++ke++ ++ l++ +g++We +l+ ++ +r + +GW +F+ an+L++gD+++F+l +++ +++v++++++ 913300 154 RSVTASNLSRDTVGFPINFAKQNGLNKERQ-EIFLMNGEGKTWESELKRWGD-CRLSIVRGWTSFCTANKLEVGDSCTFRLLQKTAETPVFQLCSS 247 5678999*****************9875.************76666.6889999*****************9999999***986 PP
3	B3	42.5	1.2e-13	277	366	8	98
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l g lp +f++e+ +++++ +++l d++ +W ++l+++k+ g ++ ++GWk+F+ an++ +g++++++l++ + ++++k+++ 913300 277 LNSLHVGKQHLPVSFTRENRLINPG--KIVLVDKNRAEWLMELKVDKSTGLmyIISGNGWKKFCAANEISAGESLILELIR-GGVTPLLKFIS 366 4444445567*******999655..7***********998888776444569*******************98.67778888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-26	6	105	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.04E-22	9	109	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.957	11	103	IPR003340	B3 DNA binding domain
CDD	cd10017	3.72E-19	12	98	No hit	No description
SMART	SM01019	3.2E-25	14	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.1E-14	25	95	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.3E-21	144	247	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-21	145	246	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.536	151	247	IPR003340	B3 DNA binding domain
CDD	cd10017	1.20E-19	151	241	No hit	No description
Pfam	PF02362	1.8E-21	152	247	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-24	152	248	IPR003340	B3 DNA binding domain
CDD	cd10017	1.31E-15	269	366	No hit	No description
Pfam	PF02362	1.3E-12	270	366	IPR003340	B3 DNA binding domain
SMART	SM01019	9.3E-22	270	368	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.816	270	368	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.37E-16	271	368	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.1E-14	273	364	IPR015300	DNA-binding pseudobarrel domain
SMART	SM00341	1.4E-4	540	622	IPR002121	HRDC domain
PROSITE profile	PS50967	17.197	540	622	IPR002121	HRDC domain
SuperFamily	SSF47819	9.59E-13	543	616	IPR010997	HRDC-like
Pfam	PF00570	2.3E-15	545	612	IPR002121	HRDC domain
Gene3D	G3DSA:1.10.150.80	7.5E-11	546	616	IPR002121	HRDC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000166	Molecular Function	nucleotide binding
GO:0003677	Molecular Function	DNA binding
GO:0003824	Molecular Function	catalytic activity

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MANASPLSRT NPHFFQPLLP GFDSHLNIPV KFFSDHIKGK HEGKTVNLRS DASERTWKVK 60 MEGNRLTKGW KEFVKAHDLR VSDFVVFRHE GEMLFNVTAL GPSCCEIQYA QPRRHEEDEE 120 SNETEISLRS EKEVEENVKT ESDQSSPNLN CFSRSVTASN LSRDTVGFPI NFAKQNGLNK 180 ERQEIFLMNG EGKTWESELK RWGDCRLSIV RGWTSFCTAN KLEVGDSCTF RLLQKTAETP 240 VFQLCSSTKS ERKIQSAEGC IDDKTGGSRF VKLTPTLNSL HVGKQHLPVS FTRENRLINP 300 GKIVLVDKNR AEWLMELKVD KSTGLMYIIS GNGWKKFCAA NEISAGESLI LELIRGGVTP 360 LLKFISKLDQ PPFEAEAQAH KRARVQKLSQ ETEPKLDMRE KTAEDRVPPR ASNKSSGNQE 420 NLQHTQPCSV SNQLAKVKQS VVDALTSIRR FRAELDTTEQ KLEISLQEIN KLGMICIAIF 480 TFNFGSTRFS KNFGTERTED NGNKTTTSSK PGATLAKDPL ASEKQSTLPL PTKDGLPIDI 540 NLSFNIYTAV RKLRTALARE GPDGVMAYQI FMNSTLQQIS RQIPRTKEEL LQINGLVQAK 600 VSKYGDRLLE TIETTVNEYY GTKKKDPIII HQ*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MANASPLSRT NPHFFQPLLP GFDSHLNIPV KFFSDHIKGK HEGKTVNLRS DASERTWKVK  60
MEGNRLTKGW KEFVKAHDLR VSDFVVFRHE GEMLFNVTAL GPSCCEIQYA QPRRHEEDEE  120
SNETEISLRS EKEVEENVKT ESDQSSPNLN CFSRSVTASN LSRDTVGFPI NFAKQNGLNK  180
ERQEIFLMNG EGKTWESELK RWGDCRLSIV RGWTSFCTAN KLEVGDSCTF RLLQKTAETP  240
VFQLCSSTKS ERKIQSAEGC IDDKTGGSRF VKLTPTLNSL HVGKQHLPVS FTRENRLINP  300
GKIVLVDKNR AEWLMELKVD KSTGLMYIIS GNGWKKFCAA NEISAGESLI LELIRGGVTP  360
LLKFISKLDQ PPFEAEAQAH KRARVQKLSQ ETEPKLDMRE KTAEDRVPPR ASNKSSGNQE  420
NLQHTQPCSV SNQLAKVKQS VVDALTSIRR FRAELDTTEQ KLEISLQEIN KLGMICIAIF  480
TFNFGSTRFS KNFGTERTED NGNKTTTSSK PGATLAKDPL ASEKQSTLPL PTKDGLPIDI  540
NLSFNIYTAV RKLRTALARE GPDGVMAYQI FMNSTLQQIS RQIPRTKEEL LQINGLVQAK  600
VSKYGDRLLE TIETTVNEYY GTKKKDPIII HQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	913300

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ404473	1e-111	AJ404473.1 Arabidopsis thaliana mRNA for DNA Helicase (recQl4A gene).
GenBank	AY120761	1e-111	AY120761.1 Arabidopsis thaliana DNA helicase isolog (At1g10930) mRNA, complete cds.
GenBank	BT010133	1e-111	BT010133.1 Arabidopsis thaliana At1g10930 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872301.1	0.0	B3 domain-containing protein REM8
Swissprot	Q8H2D1	0.0	REM8_ARATH; B3 domain-containing protein REM8
TrEMBL	D7MB41	0.0	D7MB41_ARALL; Uncharacterized protein
STRING	scaffold_701042.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31680.1	0.0	B3 family protein

Link Out ? help Back to Top
Phytozome	913300
Entrez Gene	9305389

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]