PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913296
Common NameARALYDRAFT_913296
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 395aa    MW: 45244.2 Da    PI: 9.9832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913296genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1722951190
            HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
      B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
            ++++ l++p +f+++h +gk+ e+kt +l +  s r W+vk+  ++++    lt+GWkeF+ a++L+ gD+++Fk++g++ f
  913296 22 SETH-LSIPVTFFSKHiEGKN-EQKTARLISdASDRIWQVKM--DGRR----LTEGWKEFATAHNLQIGDIIIFKHQGDMLF 95
            4444.9**********75554.5567777765999*******..9998....***********************9987666 PP
2B369.35.1e-22161254498
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             + +++++lk + + lpkk  ++  ++k+++ +++l +++g+sW+++l++r + g+y++++GWk+F+++n+ kegD ++F l+g+ + ++++ ++ 
  913296 161 ANVTASNLKFDTMNLPKKASSSKALNKRCH-KIILVNKEGNSWTLNLRFRESEGSYYIRGGWKRFCSENRQKEGDLITFNLVGDGRSTPMLCICP 254
             56788999999*********999***9887.*****************************************************9999**99996 PP
3B337.15.5e-12288386199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 
             f++  +++++ k + + lp +f+ +++g+++++ +++l+d++g +   +l +   + gr  l+kGWk F++an++   g+ + +kl++ ++ ++++++++k
  913296 288 FVTLSLTAYNIKYSKINLPVEFT-KINGITRKHEKIILMDKHGVKRLTRLVHdGPNYGRRGLGKGWKLFCEANDVLkIGEPFKLKLTW-ENNTPLLRFCSK 386
             667778999*************9.6667789999*********999999988844555557************9644*********99.777899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-228105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-209109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5911103IPR003340B3 DNA binding domain
CDDcd100171.38E-1512100No hitNo description
SMARTSM010193.9E-2214103IPR003340B3 DNA binding domain
PfamPF023623.6E-122393IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-19157250IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.565158256IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-19158253IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-20158254No hitNo description
SMARTSM010191.0E-23159256IPR003340B3 DNA binding domain
PfamPF023623.1E-20160254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-16280386IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-14284389IPR015300DNA-binding pseudobarrel domain
CDDcd100176.63E-12287385No hitNo description
PROSITE profilePS508638.106288386IPR003340B3 DNA binding domain
PfamPF023621.6E-11288386IPR003340B3 DNA binding domain
SMARTSM010191.8E-19288387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVNHPLQSPA NPHFFQPLLP GSETHLSIPV TFFSKHIEGK NEQKTARLIS DASDRIWQVK  60
MDGRRLTEGW KEFATAHNLQ IGDIIIFKHQ GDMLFSVTPF GPSCCEIQYV QCLIKKEDDN  120
VHDDEDDMEN QHNSRKGLRQ KNLKPKTELK LSLSYDYCFV ANVTASNLKF DTMNLPKKAS  180
SSKALNKRCH KIILVNKEGN SWTLNLRFRE SEGSYYIRGG WKRFCSENRQ KEGDLITFNL  240
VGDGRSTPML CICPEEACSE LMGIARGKKK TKKRRMWVAS SSSRQNSFVT LSLTAYNIKY  300
SKINLPVEFT KINGITRKHE KIILMDKHGV KRLTRLVHDG PNYGRRGLGK GWKLFCEAND  360
VLKIGEPFKL KLTWENNTPL LRFCSKVKEE PIYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268275KKTKKRRM
Cis-element ? help Back to Top
SourceLink
PlantRegMap913296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867283.10.0B3 domain-containing protein REM7
TrEMBLD7MB370.0D7MB37_ARALL; Uncharacterized protein
STRINGscaffold_701038.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-84B3 family protein