PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913148
Common NameARALYDRAFT_913148
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 82aa    MW: 9386.56 Da    PI: 4.4885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913148genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind40.66.9e-131373260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmY 60
                  F   +ye ++d++l+++isws++++sf+++++eef++++L++  +     ++ F  QLn Y
        913148 13 FYVGVYEAVDDPSLDSVISWSTSNRSFIIWNPEEFHRRILSTSLQllSPDYSTFFSQLNFY 73
                  77789***********************************9976632689**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-13473IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-4981IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.95E-141173IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-101373IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MNSNKAAIRL PAFYVGVYEA VDDPSLDSVI SWSTSNRSFI IWNPEEFHRR ILSTSLQLLS  60
PDYSTFFSQL NFYVSLLYLQ D*
Cis-element ? help Back to Top
SourceLink
PlantRegMap913148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730404.12e-16heat stress transcription factor A-4a
RefseqXP_022566820.12e-16heat stress transcription factor A-4a-like
TrEMBLD7M9N22e-51D7M9N2_ARALL; Uncharacterized protein
STRINGscaffold_700890.13e-52(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1817268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.11e-16Winged helix-turn-helix transcription repressor DNA-binding