PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912924
Common NameARALYDRAFT_912924
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 537aa    MW: 60304.3 Da    PI: 6.9016
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912924genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.4e-083383751954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
    912924 338 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 375
               664459******************************88 PP
2BELL126.97.6e-41204275172
    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             erqe+q++ +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  912924 204 ERQEMQSRLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 275
             79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-73139273IPR006563POX domain
PfamPF075261.4E-48145272IPR006563POX domain
PROSITE profilePS5007111.758316379IPR001356Homeobox domain
SMARTSM003891.0E-8319383IPR001356Homeobox domain
CDDcd000861.27E-10319380No hitNo description
SuperFamilySSF466891.58E-16320385IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26322384IPR009057Homeodomain-like
PfamPF059201.0E-17336375IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MENYPETKFL PGNSMIQNAT VSYSEGLAGR ERTEANNVSA SQERQALSRF GGISQMQNLD  60
QDFGSWRDQA SDRNGFQLMS AMAGATGILQ TGQGLSLSLG SQILPGIHQM SHQNMAPRAE  120
HFRGNEYATQ SFLVGNQNLD VVRKIPNSKY LKAAQQLLDE AVNVRKALKQ FQTEGDKNNE  180
NPQEPNQNTQ DSSTNPPAEI SHSERQEMQS RLTKLLSMLD EVDRRYKQYY QQMQIVVSSF  240
DVIAGYGAAK PYTALALQTI SRHFRSLRDA ISGQILVIRK CLGEQQDGSD GKRVGIISRL  300
KYVDQHLRQQ RGFMQPQAWR PQRGLPENSV LILRAWLFEH FLHPYPKDSD KIMLARQTGL  360
SRGQVSNWFI NARVRLWKPM VEEIYKEEFT ENDSNSSSEN TPKMSEIGHA AAVDEDRAQE  420
FSQDQTKPDH GHKYGEETRG MVQGSHMDGR KFMAVEPTYN VADMSRLGRG DVSLTLGLQN  480
SQGHGTVVAM SSEAAYNFSG VDIYENAIPG AEMEYVNPRS RQNRINSSQL VHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14325383563Homeobox protein Meis2
3k2a_B1e-14325383563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap912924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0122910.0BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867111.10.0BEL1-like homeodomain protein 6 isoform X1
RefseqXP_020874835.10.0BEL1-like homeodomain protein 6 isoform X1
RefseqXP_020874836.10.0BEL1-like homeodomain protein 6 isoform X1
RefseqXP_020874838.10.0BEL1-like homeodomain protein 6 isoform X1
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLD7MEC20.0D7MEC2_ARALL; Uncharacterized protein
STRINGscaffold_700666.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]