PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

912814

Common Name

ARALYDRAFT_912814

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 270aa MW: 28107.9 Da PI: 4.6529

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
912814	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	137	158	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg+ F ++ H+r H 912814 137 VCHICGRGFGSWKAVFGHMRAH 158 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MTSNPEKTKV DDVEEDERED SDEQWNDEET DTREIVLGLP ALSISSRIFV DSSSVAVVEE 60 DVEKARLNEQ AVLAAGLVLA AAEEAVMKGV NEGSGSGGKK KSRPRTSTKT DDKADGSGKK 120 PKKKSSELTH PPKGPPVCHI CGRGFGSWKA VFGHMRAHKD RNYQGFLPPP TFSAAAERFS 180 IPGRNSAFAI VTAGGGSSGG LAGGGGSSGG CPASAGGDAW GCEGGKGAAI DLNVDPVEEV 240 EEATESGYIA KFDLNKSPPK DEEEEDKAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	912814

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002867063.1	0.0	uncharacterized protein LOC9305148
TrEMBL	D7MCE8	0.0	D7MCE8_ARALL; Uncharacterized protein
STRING	scaffold_700556.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35610.1	2e-66	C2H2 family protein

Link Out ? help Back to Top
Phytozome	912814
Entrez Gene	9305148