PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 912597 | ||||||||
Common Name | ARALYDRAFT_912597 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 106aa MW: 12097.5 Da PI: 11.1251 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.8 | 8.9e-21 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri++ +r++ f+kR+ng+lKKA+EL +LC++ va+i+fs++gkl+ + 912597 9 KRINDRQQRNIAFAKRKNGLLKKAYELFILCNVPVALILFSPSGKLFVF 57 79********************************************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.133 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-26 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-23 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 8.20E-23 | 2 | 58 | No hit | No description |
PRINTS | PR00404 | 8.3E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-20 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MGRVKIQIKR INDRQQRNIA FAKRKNGLLK KAYELFILCN VPVALILFSP SGKLFVFYAK 60 ARYMYINIVS LPKQITFSLS SSSFNSNILL FHHISSINCF VINLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6byy_B | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6byy_C | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6byy_D | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_A | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_B | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_C | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_D | 6e-17 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 912597 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL035601 | 1e-86 | AL035601.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F6G17 (ESSA project). | |||
GenBank | AL161591 | 1e-86 | AL161591.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87. | |||
GenBank | CP002687 | 1e-86 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874518.1 | 4e-37 | agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 3e-21 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | D7MAM5 | 4e-68 | D7MAM5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_700339.1 | 6e-69 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-23 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | 912597 |
Entrez Gene | 9305059 |
Publications ? help Back to Top | |||
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