PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912253
Common NameARALYDRAFT_912253
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 163aa    MW: 18368.8 Da    PI: 10.7132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912253genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.6e-214594355
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ykGVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeAa a+++a+ k++g
  912253 45 YKGVRRRP-WGKYAAEIRDPNKNG--ARIWLGTYETPEEAAVAYDQAAFKMRG 94
            9*******.***********8887..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-3043104No hitNo description
SuperFamilySSF541714.18E-2444103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-3344103IPR001471AP2/ERF domain
PROSITE profilePS5103224.05244102IPR001471AP2/ERF domain
SMARTSM003804.7E-3844108IPR001471AP2/ERF domain
PfamPF008474.1E-154494IPR001471AP2/ERF domain
PRINTSPR003672.6E-134556IPR001471AP2/ERF domain
PRINTSPR003672.6E-1384104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEGELRRDNG SAVLDWIRRQ LLEEDDFDLL TAQDSSSPPR RSANYKGVRR RPWGKYAAEI  60
RDPNKNGARI WLGTYETPEE AAVAYDQAAF KMRGSKAKLN FPHLIGIDQA EPVRVTNGNK  120
RQRSMEPNSQ AAKRRSIINL TATTLPSLGL KLSVLQKHLQ RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2944102260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2944102563ATERF1
3gcc_A4e-2944102563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap912253
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424028.15e-89PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K12e-41ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLD7M6C01e-115D7M6C0_ARALL; Uncharacterized protein
STRINGscaffold_604310.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-44ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]