PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 912247 | ||||||||
Common Name | ARALYDRAFT_912247 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 404aa MW: 43637.6 Da PI: 7.8241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.8 | 2.6e-15 | 220 | 265 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ L++l+P++ K +Ka++L +++eY+k+Lq 912247 220 HNQSERKRRDKINQRMKILQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 265 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-18 | 213 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-17 | 213 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.561 | 215 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-13 | 220 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.24E-16 | 220 | 269 | No hit | No description |
SMART | SM00353 | 2.5E-17 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSQCVPNCHI DDTTAAAAAT TTVRSITAAD IPILDYEVAE LTWENGQLGL HGLGPPRVTA 60 SSTKYSTGAG GTLESIVDQA TRLPNHKPTD ELVPWFHHRS SRAAMAMDAL VPCSKLVQEQ 120 QSKPGGVGST RVGSCSDGRT MAGGKRARVA PEWSGGGSQR LTMDTYDVGF TSTSMGSQDN 180 TIDDHDSVCH SRPQMEDEEE KKAGGKSSVS TKRSRAAAIH NQSERKRRDK INQRMKILQK 240 LVPNSSKTDK ASMLDEVIEY LKQLQAQVSM MSRMNMPSMM LPMAMQQQQQ QLQMSLMSNP 300 MGLGIGMGMP GLGLLDLNSM NRAAAAATAP NIHANMMPNP FAPMTCPSWD ASSNDARFQS 360 PLIPDPMAAF LACSTQPTTM EAYSRMAALY QQMQQQLPPS NPK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 228 | ERKRRD |
2 | 224 | 229 | RKRRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 912247 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117229 | 0.0 | AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08. | |||
GenBank | BT025971 | 0.0 | BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002875048.1 | 0.0 | transcription factor UNE10 | ||||
Swissprot | Q8GZ38 | 0.0 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | D7M5T4 | 0.0 | D7M5T4_ARALL; Uncharacterized protein | ||||
STRING | scaffold_604304.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3919 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 912247 |
Entrez Gene | 9309044 |
Publications ? help Back to Top | |||
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