PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910739
Common NameARALYDRAFT_910739
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 147aa    MW: 16548.5 Da    PI: 8.4739
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910739genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-075981527
             --SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
             lC++f  + +C++Gd+C++ H++
   910739 59 LCNRFITSNFCPFGDSCRYFHPK 81
             8********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004514.8E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576675.67E-13447No hitNo description
PfamPF062209.6E-9537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010312.9065482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-65980IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPSGKYYCDY CDKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSSDLINPQ VSNFATKGLC  60
NRFITSNFCP FGDSCRYFHP KNNPGSTGFA NNTQLHVDML NQHIEGSTLN RDYVSGRPGA  120
GWFDLPPSLK PPPEQGYPQL PFIDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap910739
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007323e-60AJ000732.1 Arabidopsis thaliana ASKalpha gene.
GenBankCP0026883e-60CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P163e-60AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874322.11e-107zinc finger CCCH domain-containing protein 3
TrEMBLD7M5C71e-106D7M5C7_ARALL; Uncharacterized protein
STRINGscaffold_602796.11e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-103C3H family protein